RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 MDS2Q8NDY4 140 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 UBE2D3P61077 147 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 UBE2D2P62837 147 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 FAM19A1Q7Z5A9 133 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 TOMM7Q9P0U1 55 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 SRRM5B3KS81 715 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 NANOS2P60321 138 aaKnown RBP2.61□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV3-15P01624 115 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 P0DMU3 169 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 FAM231AP0DMU4 169 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 FAM231CP0DMU5 169 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 PIEZO1Q92508 2521 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 PATE3B3GLJ2 98 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 CLEC19AQ6UXS0 136 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM178BH3BS89 294 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 CRYGAP11844 174 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 RUSC1-AS1Q66K80 236 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 IGLV2-11P01706 119 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 ZNF784Q8NCA9 323 aaPredicted RBP2.61□□□□□ -1.99
SYNE1-212ENST00000423061 RPL36AP83881 106 aaKnown RBP2.61□□□□□ -1.99
SYNE1-212ENST00000423061 RPL36ALQ969Q0 106 aaKnown RBP2.61□□□□□ -1.99
SYNE1-212ENST00000423061 COL4A4P53420 1690 aaPredicted RBP2.61□□□□□ -1.99
SYNE1-212ENST00000423061 DEFB123Q8N688 67 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 NEXN-AS1Q8NBZ9 246 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 SBSPONQ8IVN8 264 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 COL4A3Q01955 1670 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM14CQ9P0S9 112 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV3OR16-12A0A075B7B8 117 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 PRR4Q16378 134 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM141Q96I45 108 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 UPK3BQ9BT76 320 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 DKK4Q9UBT3 224 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 AGRNO00468 2067 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 C15orf32Q32M92 178 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV1OR2-108A0A075B7D4 117 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV3-73A0A0B4J1V6 119 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 PRIMA1Q86XR5 153 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 F8WEM9 126 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV3-20P01619 116 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 Q8N7P7 452 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 NAV2Q8IVL1 2488 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 MUC22E2RYF6 1773 aaPredicted RBP2.6□□□□□ -1.99
SYNE1-212ENST00000423061 CHKB-CPT1BH3BT56 60 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 PIK3CD-AS1Q5SR53 167 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 RNF185Q96GF1 192 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV1-46P01743 117 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV1-16P04430 117 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 RPL39P62891 51 aaKnown RBP2.6□□□□□ -1.99
SYNE1-212ENST00000423061 UBE2D1P51668 147 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 H3BRN7 92 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 LRP4O75096 1905 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 ZFHX2Q9C0A1 2572 aaPredicted RBP2.6□□□□□ -1.99
SYNE1-212ENST00000423061 CCKP06307 115 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 TSPEAR-AS2P59090 65 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 EPOPA6NHQ4 379 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 PAX8Q06710 450 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 ATP1A1-AS1Q5TC04 95 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 C5orf38Q86SI9 138 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV1OR15-1A0A075B7D0 117 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 DAZAP2Q15038 168 aaPredicted RBP2.6□□□□□ -1.99
SYNE1-212ENST00000423061 ARHGAP32A7KAX9 2087 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 TRBV30A0A0K0K1B3 111 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 TOMM6Q96B49 74 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 VSIG2Q96IQ7 327 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 PRAC2D3DTV9 90 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 GAFA1Q96PS6 74 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 NXPH4O95158 308 aa2.6□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM223A0PJW6 202 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 RNF5Q99942 180 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 SPRR3Q9UBC9 169 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV1-3A0A0C4DH29 117 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 MRPL36Q9P0J6 103 aaKnown RBP2.59□□□□□ -1.99
SYNE1-212ENST00000423061 RMI2Q96E14 147 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 A0A0J9YXV3 536 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 BPESC1Q9GZL8 116 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 INSP01308 110 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV1-8P0DP01 117 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 C9orf106Q8NAJ2 232 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 CPAMD8Q8IZJ3 1885 aa2.59□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV1D-17A0A075B6S4 117 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 F6UB75 175 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 NCOR2Q9Y618 2525 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 RPL28P46779 137 aaKnown RBP2.59□□□□□ -2
SYNE1-212ENST00000423061 SCXQ7RTU7 201 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 C17orf100A8MU93 164 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 SAA4P35542 130 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 RITA1Q96K30 269 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 COX7A2LO14548 114 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 A0A0J9YXY3 114 aa2.59□□□□□ -2
SYNE1-212ENST00000423061 MRPS36P82909 103 aaKnown RBP2.59□□□□□ -2
SYNE1-212ENST00000423061 KRTAP27-1Q3LI81 207 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 FHL2Q14192 279 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 WT1-ASQ06250 92 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 IGLV3-1P01715 115 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 Q6JHZ5 121 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 ZNF71Q9NQZ8 489 aaPredicted RBP2.58□□□□□ -2
SYNE1-212ENST00000423061 BLCAPP62952 87 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 IGHV1-18A0A0C4DH31 117 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 WDR86Q86TI4 376 aa2.58□□□□□ -2
SYNE1-212ENST00000423061 UBL5Q9BZL1 73 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms