RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 K7EM74 188 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 INSP01308 110 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 SCTP09683 121 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 TFF3Q07654 80 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 KISS1Q15726 138 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 SPANXN5Q5MJ07 72 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 Q6ZQT7 251 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 Q6ZR03 302 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 ZNF818PQ6ZRF7 136 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 C3orf22Q8N5N4 141 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 Q8N7P7 452 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 C3orf56Q8N813 242 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 HEATR1Q9H583 2144 aaKnown RBP3.56□□□□□ -1.84
VPS13A-207ENST00000419472 ESPL1Q14674 2120 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 VPS13CQ709C8 3753 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 OOSP1A8MZH6 123 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 CECR9P0C854 216 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 ARL14EPLP0DKL9 152 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 CCL1P22362 96 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 RPL30P62888 115 aaKnown RBP3.55□□□□□ -1.84
VPS13A-207ENST00000419472 DAZ2Q13117 558 aaKnown RBP3.55□□□□□ -1.84
VPS13A-207ENST00000419472 C14orf177Q52M58 125 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 Q5XG85 94 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 SPANXDQ9BXN6 97 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 DAZ3Q9NR90 486 aaKnown RBP3.55□□□□□ -1.84
VPS13A-207ENST00000419472 KIAA1549Q9HCM3 1950 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 ITPR2Q14571 2701 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 C5orf49A4QMS7 147 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 SS18L1O75177 396 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-207ENST00000419472 DEFA4P12838 97 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 LINC00596Q86U02 117 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 CNEP1R1Q8N9A8 125 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 SND1-IT1Q9HBX3 110 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 PRNDQ9UKY0 176 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 MED13LQ71F56 2210 aa3.55□□□□□ -1.84
VPS13A-207ENST00000419472 PGPA6NDG6 321 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 UPK2O00526 184 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 PGLYRP1O75594 196 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-207ENST00000419472 HLA-DRB4P13762 266 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 FKBP2P26885 142 aaKnown RBP3.54□□□□□ -1.84
VPS13A-207ENST00000419472 ERCC8Q13216 396 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 C9orf153Q5TBE3 101 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 FAM27BQ5VT28 67 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 TEX36Q5VZQ5 186 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 CD177Q8N6Q3 437 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 C14orf178Q8N769 122 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-207ENST00000419472 LINC01006Q8NI28 216 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 LINC00526Q96FQ7 95 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 IGF2BP2-AS1Q96M15 143 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 LINC00477Q96M19 166 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 ODF3Q96PU9 254 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 HLA-DRB4X5D2U9 266 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 TRGV5A0A0B4J1U4 118 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 A0A0J9YWU9 116 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 A8MWV9 139 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 UQCRQO14949 82 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 COX7A2P2O60397 106 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 LYZL6O75951 148 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 GCHFRP30047 84 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 C10orf128Q5T292 105 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 HRCT1Q6UXD1 115 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 SPTSSAQ969W0 71 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 CRYBG3Q68DQ2 2970 aa3.54□□□□□ -1.84
VPS13A-207ENST00000419472 UTP20O75691 2785 aaKnown RBP3.54□□□□□ -1.84
VPS13A-207ENST00000419472 TRBV25-1A0A075B6N4 114 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 LTAP01374 205 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 MORN3Q6PF18 240 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-207ENST00000419472 C10orf126Q8N4M7 172 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 TMEM75Q8N9X5 138 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 TRBV7-7A0A0K0K1E9 115 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 KRTAP16-1A8MUX0 517 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 IGKV1-39P01597 117 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 IGKV1D-39P04432 117 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 CNTFRP26992 372 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 FOXA3P55318 350 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-207ENST00000419472 HBBP68871 147 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 ANKRD29Q8N6D5 301 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 DPH3Q96FX2 82 aa3.53□□□□□ -1.84
VPS13A-207ENST00000419472 ANKHD1Q8IWZ3 2542 aaKnown RBP3.53□□□□□ -1.84
VPS13A-207ENST00000419472 IGKV1-5P01602 117 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 UBE2D3P61077 147 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 HSPE1P61604 102 aaKnown RBP3.52□□□□□ -1.85
VPS13A-207ENST00000419472 UBE2D2P62837 147 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 PIGYQ3MUY2 71 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 RPRMLQ8N4K4 120 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 C15orf53Q8NAA6 179 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 CCDC168Q8NDH2 2452 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 RBAKDNA6NC62 111 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 SCGB1C2P0DMR2 95 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 CRYGAP11844 174 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 CRYGSP22914 178 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 CAMK2N1Q7Z7J9 78 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 FAM57AQ8TBR7 257 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 BORCS8Q96FH0 119 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 LINC01600Q96MT4 127 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 NBEAL2Q6ZNJ1 2754 aa3.52□□□□□ -1.85
VPS13A-207ENST00000419472 A0A096LNJ9 63 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 FAM236AA0A1B0GUQ0 79 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 FAM236BA0A1B0GV22 79 aa3.51□□□□□ -1.85
VPS13A-207ENST00000419472 WI2-2373I1.2A0A1W2PRP0 233 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms