RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ERASQ7Z444 233 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 NEXN-AS1Q8NBZ9 246 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 C4orf3Q8WVX3 66 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 CBY3A6NI87 242 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 LINC01619G3V211 115 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 VCYO14598 125 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 SPRY2O43597 315 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 POLR2KP53803 58 aaKnown RBP10.92□□□□□ -0.66
USP4-203ENST00000415188 SUMO4Q6EEV6 95 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 AMTNQ6UX39 209 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 Q6ZVH6 145 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 CYSLTR1Q9Y271 337 aa10.92□□□□□ -0.66
USP4-203ENST00000415188 CHTOPQ9Y3Y2 248 aaKnown RBP10.92□□□□□ -0.66
USP4-203ENST00000415188 IGKV2D-26A0A0A0MRZ7 120 aa10.91□□□□□ -0.66
USP4-203ENST00000415188 SELENOKQ9Y6D0 94 aa10.91□□□□□ -0.66
USP4-203ENST00000415188 TAL2Q16559 108 aa10.9□□□□□ -0.66
USP4-203ENST00000415188 PAPPA-AS1Q5QFB9 102 aa10.9□□□□□ -0.66
USP4-203ENST00000415188 GTSCR1Q86UQ5 136 aa10.9□□□□□ -0.66
USP4-203ENST00000415188 TMEM141Q96I45 108 aa10.9□□□□□ -0.66
USP4-203ENST00000415188 KIR2DL4Q99706 377 aa10.9□□□□□ -0.66
USP4-203ENST00000415188 C9orf118A6NHY6 69 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 SPINK13Q1W4C9 94 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 Q8N1Y9 231 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 OR4C5Q8NGB2 326 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 BAALCQ8WXS3 180 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 CHAC1Q9BUX1 264 aa10.89□□□□□ -0.67
USP4-203ENST00000415188 ZNF256Q9Y2P7 627 aaPredicted RBP10.89□□□□□ -0.67
USP4-203ENST00000415188 TRBV27A0A0K0K1C4 114 aa10.88□□□□□ -0.67
USP4-203ENST00000415188 RHOHQ15669 191 aa10.88□□□□□ -0.67
USP4-203ENST00000415188 PIK3CD-AS1Q5SR53 167 aa10.88□□□□□ -0.67
USP4-203ENST00000415188 TRPT1Q86TN4 253 aaKnown RBP10.88□□□□□ -0.67
USP4-203ENST00000415188 TIMM17AQ99595 171 aa10.88□□□□□ -0.67
USP4-203ENST00000415188 EDA2RQ9HAV5 297 aa10.88□□□□□ -0.67
USP4-203ENST00000415188 TRBV25-1A0A075B6N4 114 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 TRAV12-2A0A075B6T6 113 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 F5H697 171 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 SLURP1P55000 103 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 TCTAP57738 103 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 KHDC1LQ5JSQ8 128 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 ZFP2Q6ZN57 461 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 TSSC4Q9Y5U2 329 aaPredicted RBP10.87□□□□□ -0.67
USP4-203ENST00000415188 A0A087WWL8 130 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 OR11H12B2RN74 326 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 K7EP13 123 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 IGKV3-20P01619 116 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 CRYGDP07320 174 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 WFDC9Q8NEX5 89 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 OR11H1Q8NG94 326 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 OR11H2Q8NH07 326 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 MRAPQ8TCY5 172 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 PTH2Q96A98 100 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 JPT2Q9H910 190 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 MDFICQ9P1T7 246 aa10.87□□□□□ -0.67
USP4-203ENST00000415188 SDHAF1A6NFY7 115 aa10.86□□□□□ -0.67
USP4-203ENST00000415188 LINC00467Q9BRT7 94 aa10.86□□□□□ -0.67
USP4-203ENST00000415188 TM2D2Q9BX73 214 aa10.86□□□□□ -0.67
USP4-203ENST00000415188 PRSS29PA6NIE9 313 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 IGIPA6NJ69 53 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 E9PLD3 99 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 H3BMM0 161 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 M0QY20 66 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 PF4P02776 101 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 SMIM13P0DJ93 91 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 DEFB131AP59861 70 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 ZNF56Q15929 161 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 AMMECR1LQ6DCA0 310 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 GTF2H5Q6ZYL4 71 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 TP53TG1Q9Y2A0 90 aa10.85□□□□□ -0.67
USP4-203ENST00000415188 TRAV8-6A0A0B4J262 113 aa10.84□□□□□ -0.67
USP4-203ENST00000415188 PMVKQ15126 192 aa10.84□□□□□ -0.67
USP4-203ENST00000415188 DYNLRB2Q8TF09 96 aa10.84□□□□□ -0.67
USP4-203ENST00000415188 CLUHP3Q96NS8 147 aa10.84□□□□□ -0.67
USP4-203ENST00000415188 SPAG8Q99932 426 aaPredicted RBP10.84□□□□□ -0.67
USP4-203ENST00000415188 TRAV25A0A0B4J276 109 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 GCSHP23434 173 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 HERVK_113P61574 105 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 DEFB136Q30KP8 78 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 ZNF876PQ49A33 203 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 FAM74A4Q5TZK3 123 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 C18orf65Q6ZTR6 163 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 CEND1Q8N111 149 aa10.83□□□□□ -0.68
USP4-203ENST00000415188 MYMXA0A1B0GTQ4 84 aa10.82□□□□□ -0.68
USP4-203ENST00000415188 KNCNA6PVL3 124 aa10.82□□□□□ -0.68
USP4-203ENST00000415188 NEGR1Q7Z3B1 354 aa10.82□□□□□ -0.68
USP4-203ENST00000415188 TMEM61Q8N0U2 210 aa10.82□□□□□ -0.68
USP4-203ENST00000415188 KLHL30-AS1Q8NEE0 82 aa10.82□□□□□ -0.68
USP4-203ENST00000415188 ZNF415Q09FC8 603 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 MORN3Q6PF18 240 aaPredicted RBP10.81□□□□□ -0.68
USP4-203ENST00000415188 MAPKAPK5-AS1Q8N8E1 139 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 RAX2Q96IS3 184 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 TTTY13Q9BZ97 58 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 AGRNO00468 2067 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 GAGE10A6NGK3 116 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 A8MWV9 139 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 I3L3M4 83 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 TSHBP01222 138 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 FXYD2P54710 66 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 KRTAP10-11P60412 298 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 DEFB114Q30KQ6 69 aa10.81□□□□□ -0.68
USP4-203ENST00000415188 LINC00482Q8N8I6 264 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms