RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZNF56Q15929 161 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 TMEM241Q24JQ0 296 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 LYZL1Q6UWQ5 148 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 Q6ZSN1 163 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 C14orf178Q8N769 122 aaPredicted RBP4.32□□□□□ -1.72
USP54-202ENST00000413442 C15orf54Q8N8G6 183 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 PGLYRP4Q96LB8 373 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 KRTAP1-5Q9BYS1 174 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 JPT2Q9H910 190 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 OSTCQ9NRP0 149 aa4.32□□□□□ -1.72
USP54-202ENST00000413442 TRBV25-1A0A075B6N4 114 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 A0A1B0GUV1 79 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 C16orf90A8MZG2 172 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 H7C423 109 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 M0QY20 66 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 GZMBP10144 247 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 RAB14P61106 215 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 RPL19P84098 196 aaKnown RBP4.31□□□□□ -1.72
USP54-202ENST00000413442 RASL11AQ6T310 242 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 NIT1Q86X76 327 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 SMIM7Q9BQ49 75 aa4.31□□□□□ -1.72
USP54-202ENST00000413442 A0A087WTM6 91 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 TRAV8-4A0A0B4J246 113 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 A0A1B0GW15 77 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 NCR2O95944 276 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 SRP19P09132 144 aaKnown RBP4.3□□□□□ -1.72
USP54-202ENST00000413442 SMAGPQ0VAQ4 97 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 TWIST1Q15672 202 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 MIAQ16674 131 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 IQCJQ1A5X6 159 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 C14orf177Q52M58 125 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 LCE2CQ5TA81 110 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 ATRAIDQ6UW56 229 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 SPATA12Q7Z6I5 190 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 Q8N976 141 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 NEXN-AS1Q8NBZ9 246 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 TSKUQ8WUA8 353 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 NAT8Q9UHE5 227 aa4.3□□□□□ -1.72
USP54-202ENST00000413442 EPPK1P58107 5090 aaKnown RBP4.3□□□□□ -1.72
USP54-202ENST00000413442 BIRC6Q9NR09 4857 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 FRAS1Q86XX4 4008 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 IGHV1-24A0A0C4DH33 117 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 A0A1B0GUT8 65 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 LINC00862A6NCI5 91 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 TMEM262E9PQX1 116 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 K7EN84 100 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 PPP1R2P9O14990 202 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 TCAPO15273 167 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 S100A8P05109 93 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 RIGQ13278 110 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 LINC01551Q86U37 167 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 TPPP3Q9BW30 176 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 TMEM191AQ9H0A3 160 aa4.29□□□□□ -1.72
USP54-202ENST00000413442 RNASE7Q9H1E1 156 aaKnown RBP4.29□□□□□ -1.72
USP54-202ENST00000413442 DNAH10Q8IVF4 4471 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 TRBV6-5A0A0K0K1A5 114 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 A0A1B0GVG6 124 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 LRCOL1A6NCL2 159 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 IGHV3-30P01768 117 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 IGHV3-33P01772 117 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 IGHV3-30-3P0DP02 117 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 IGHV3-30-5P0DP03 117 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 PNRC1Q12796 327 aaPredicted RBP4.28□□□□□ -1.72
USP54-202ENST00000413442 COTL1Q14019 142 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 MRAP2Q96G30 205 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 CHCHD5Q9BSY4 110 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 TMEM70Q9BUB7 260 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 PRR34Q9NV39 138 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 NAT8BQ9UHF3 227 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 DNAH17Q9UFH2 4485 aa4.28□□□□□ -1.72
USP54-202ENST00000413442 HIGD1CA8MV81 97 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 CCL25O15444 150 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 CRPP02741 224 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 MGPP08493 103 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 GCSHP23434 173 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 NKX2-5P52952 324 aaPredicted RBP4.27□□□□□ -1.73
USP54-202ENST00000413442 CEBPGP53567 150 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 SUMO4Q6EEV6 95 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 DGAT2L7PQ6IED9 249 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 CLRN3Q8NCR9 226 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 GTSF1Q8WW33 167 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 ISOC2Q96AB3 205 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 TMEM243Q9BU79 118 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 C1orf43Q9BWL3 253 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 Q9UF83 564 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 KLK12Q9UKR0 248 aa4.27□□□□□ -1.73
USP54-202ENST00000413442 MUC21A0A0G2JKD1 596 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 MUC21A0A140T8X8 626 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 SMIM27A0A1W2PRY6 76 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 F8W036 122 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 J3QL48 77 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 UBE2L6O14933 153 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 PPBPP02775 128 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 ANGP03950 147 aaKnown RBP4.26□□□□□ -1.73
USP54-202ENST00000413442 ZNF25P17030 456 aaPredicted RBP4.26□□□□□ -1.73
USP54-202ENST00000413442 SSTP61278 116 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 RPL23P62829 140 aaKnown RBP4.26□□□□□ -1.73
USP54-202ENST00000413442 NTM-AS1Q6ZSK4 140 aa4.26□□□□□ -1.73
USP54-202ENST00000413442 Q8N814 137 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms