RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CYSLTR1Q9Y271 337 aa15.06■□□□□ 0
USP39-203ENST00000409470 NSD1Q96L73 2696 aaPredicted RBP15.06■□□□□ 0
USP39-203ENST00000409470 H7C1H1 209 aa15.05■□□□□ 0
USP39-203ENST00000409470 MRPL35Q9NZE8 188 aaKnown RBP15.05■□□□□ 0
USP39-203ENST00000409470 CRLF1O75462 422 aa15.05■□□□□ -0
USP39-203ENST00000409470 AZU1P20160 251 aa15.05■□□□□ -0
USP39-203ENST00000409470 LINC00482Q8N8I6 264 aa15.05■□□□□ -0
USP39-203ENST00000409470 HINT1P49773 126 aaPredicted RBP15.04■□□□□ -0
USP39-203ENST00000409470 ERASQ7Z444 233 aa15.04■□□□□ -0
USP39-203ENST00000409470 MRPL16Q9NX20 251 aaKnown RBP15.04■□□□□ -0
USP39-203ENST00000409470 FN1P02751 2386 aaKnown RBP15.04■□□□□ -0
USP39-203ENST00000409470 TRAV12-1A0A0B4J245 112 aa15.04■□□□□ -0
USP39-203ENST00000409470 C19orf73Q9NVV2 129 aa15.04■□□□□ -0
USP39-203ENST00000409470 TP53TG1Q9Y2A0 90 aa15.04■□□□□ -0
USP39-203ENST00000409470 RPL35AP18077 110 aaKnown RBP15.03■□□□□ -0
USP39-203ENST00000409470 C2CD3Q4AC94 2353 aa15.03■□□□□ -0
USP39-203ENST00000409470 NIPBLQ6KC79 2804 aaeCLIP15.03■□□□□ -05e-6■■■■■ 32.2
USP39-203ENST00000409470 HIVEP1P15822 2718 aa15.02■□□□□ -0
USP39-203ENST00000409470 LINC01549A6NIU2 74 aa15.02■□□□□ -0
USP39-203ENST00000409470 NMUP48645 174 aa15.02■□□□□ -0
USP39-203ENST00000409470 CFAP126Q5VTH2 177 aa15.02■□□□□ -0
USP39-203ENST00000409470 HHLA3Q9XRX5 114 aa15.02■□□□□ -0
USP39-203ENST00000409470 UFSP1Q6NVU6 142 aa15.02□□□□□ -0.01
USP39-203ENST00000409470 BAALCQ8WXS3 180 aa15.02□□□□□ -0.01
USP39-203ENST00000409470 COL5A1-AS1Q5SY13 56 aa15.01□□□□□ -0.01
USP39-203ENST00000409470 NEXN-AS1Q8NBZ9 246 aa15.01□□□□□ -0.01
USP39-203ENST00000409470 EDA2RQ9HAV5 297 aa15.01□□□□□ -0.01
USP39-203ENST00000409470 I3L3M4 83 aa15□□□□□ -0.01
USP39-203ENST00000409470 PLNP26678 52 aa15□□□□□ -0.01
USP39-203ENST00000409470 CHTOPQ9Y3Y2 248 aaKnown RBP15□□□□□ -0.01
USP39-203ENST00000409470 F8VRH5 84 aa15□□□□□ -0.01
USP39-203ENST00000409470 RHODO00212 210 aa15□□□□□ -0.01
USP39-203ENST00000409470 P0DMU3 169 aa15□□□□□ -0.01
USP39-203ENST00000409470 FAM231AP0DMU4 169 aa15□□□□□ -0.01
USP39-203ENST00000409470 FAM231CP0DMU5 169 aa15□□□□□ -0.01
USP39-203ENST00000409470 RIPPLY3P57055 190 aa15□□□□□ -0.01
USP39-203ENST00000409470 RPL39P62891 51 aaKnown RBP15□□□□□ -0.01
USP39-203ENST00000409470 ZC2HC1BQ5TFG8 222 aa15□□□□□ -0.01
USP39-203ENST00000409470 FGF6P10767 208 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 GTSCR1Q86UQ5 136 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 JMJD1CQ15652 2540 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 GIG44P09565 113 aaPredicted RBP14.99□□□□□ -0.01
USP39-203ENST00000409470 RHOHQ15669 191 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 LURAP1LQ8IV03 231 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 TNFRSF18Q9Y5U5 241 aa14.99□□□□□ -0.01
USP39-203ENST00000409470 TSHBP01222 138 aa14.98□□□□□ -0.01
USP39-203ENST00000409470 BOD1L2Q8IYS8 172 aa14.98□□□□□ -0.01
USP39-203ENST00000409470 RNASE8Q8TDE3 154 aaKnown RBP14.98□□□□□ -0.01
USP39-203ENST00000409470 RS1O15537 224 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 MPV17L2Q567V2 206 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 Q6ZSN1 163 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 TMEM263Q8WUH6 116 aaKnown RBP14.97□□□□□ -0.01
USP39-203ENST00000409470 C1QTNF4Q9BXJ3 329 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 NACAE9PAV3 2078 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 TRGV1A0A0A0MS02 117 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 PRSS29PA6NIE9 313 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 IGIPA6NJ69 53 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 C2orf91Q6ZV80 131 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 PCP2Q8IVA1 136 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 TMEM141Q96I45 108 aa14.97□□□□□ -0.01
USP39-203ENST00000409470 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.96□□□□□ -0.01
USP39-203ENST00000409470 IL17DQ8TAD2 202 aa14.96□□□□□ -0.01
USP39-203ENST00000409470 IGKV2D-26A0A0A0MRZ7 120 aa14.95□□□□□ -0.02
USP39-203ENST00000409470 TIMM17AQ99595 171 aa14.95□□□□□ -0.02
USP39-203ENST00000409470 DLEU1O43261 78 aa14.94□□□□□ -0.02
USP39-203ENST00000409470 C12orf54Q6X4T0 127 aa14.94□□□□□ -0.02
USP39-203ENST00000409470 IGHV3-53P01767 116 aa14.93□□□□□ -0.02
USP39-203ENST00000409470 OR4C5Q8NGB2 326 aa14.93□□□□□ -0.02
USP39-203ENST00000409470 INSL3P51460 131 aa14.93□□□□□ -0.02
USP39-203ENST00000409470 PMVKQ15126 192 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 C9orf66Q5T8R8 295 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 C20orf203Q8NBC4 194 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 Q9UF83 564 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 Q6ZTI0 123 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 C16orf74Q96GX8 76 aa14.92□□□□□ -0.02
USP39-203ENST00000409470 NOTCH3Q9UM47 2321 aa14.91□□□□□ -0.02
USP39-203ENST00000409470 BVES-AS1Q5T3Y7 98 aa14.91□□□□□ -0.02
USP39-203ENST00000409470 CSNK1G2-AS1Q8NCQ2 148 aa14.91□□□□□ -0.02
USP39-203ENST00000409470 NOP10Q9NPE3 64 aaKnown RBP14.91□□□□□ -0.02
USP39-203ENST00000409470 SIVA1O15304 175 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 TMEM97Q5BJF2 176 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 SPATA3Q8NHX4 192 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 DNAJC30Q96LL9 226 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 CITED1Q99966 193 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 TTTY13Q9BZ97 58 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 CST9LQ9H4G1 147 aa14.9□□□□□ -0.02
USP39-203ENST00000409470 RRN3P1Q2M238 152 aa14.89□□□□□ -0.03
USP39-203ENST00000409470 DAZ2Q13117 558 aaKnown RBP14.88□□□□□ -0.03
USP39-203ENST00000409470 ZNF479Q96JC4 524 aa14.88□□□□□ -0.03
USP39-203ENST00000409470 TRAV8-6A0A0B4J262 113 aa14.87□□□□□ -0.03
USP39-203ENST00000409470 TRAV4A0A0B4J268 109 aa14.87□□□□□ -0.03
USP39-203ENST00000409470 EMP1P54849 157 aa14.87□□□□□ -0.03
USP39-203ENST00000409470 PAPPA-AS1Q5QFB9 102 aa14.87□□□□□ -0.03
USP39-203ENST00000409470 OPRPNQ99935 248 aaPredicted RBP14.87□□□□□ -0.03
USP39-203ENST00000409470 IGLV4-69A0A075B6H9 119 aa14.86□□□□□ -0.03
USP39-203ENST00000409470 PHLDA1Q8WV24 401 aaPredicted RBP14.86□□□□□ -0.03
USP39-203ENST00000409470 IGHV3-38A0A0C4DH36 116 aa14.85□□□□□ -0.03
USP39-203ENST00000409470 PLAC8L1A1L4L8 177 aa14.85□□□□□ -0.03
USP39-203ENST00000409470 C11orf86A6NJI1 115 aa14.85□□□□□ -0.03
USP39-203ENST00000409470 ZNF25P17030 456 aaPredicted RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms