RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 FAM19A5Q7Z5A7 132 aaPredicted RBP4.14□□□□□ -1.75
CLK1-202ENST00000409403 INTS1Q8N201 2190 aaKnown RBP4.14□□□□□ -1.75
CLK1-202ENST00000409403 ODF3Q96PU9 254 aa4.14□□□□□ -1.75
CLK1-202ENST00000409403 CNFNQ9BYD5 112 aa4.14□□□□□ -1.75
CLK1-202ENST00000409403 USF3Q68DE3 2245 aa4.14□□□□□ -1.75
CLK1-202ENST00000409403 TET2Q6N021 2002 aaPredicted RBP4.14□□□□□ -1.75
CLK1-202ENST00000409403 TMSB15BA0A087X1C1 80 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 A0A0B4J2C4 111 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 SCRG1O75711 98 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 CRYGBP07316 175 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 SAA1P0DJI8 122 aaPredicted RBP4.13□□□□□ -1.75
CLK1-202ENST00000409403 PRDX2P32119 198 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 TMEM258P61165 79 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 LINC01620Q4KN68 170 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 TMEM155Q4W5P6 130 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 BAALCQ8WXS3 180 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 PROK2Q9HC23 129 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 TRBV19A0A075B6N1 114 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 IGKV2D-30A0A075B6S6 120 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 SH2D1AO60880 128 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 NDUFA3O95167 84 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 COX6CP09669 75 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 IGLC6P0CF74 106 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 RPL7P18124 248 aaKnown RBP4.13□□□□□ -1.75
CLK1-202ENST00000409403 CXCL5P42830 114 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 HERVK_113P63121 156 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 VMA21Q3ZAQ7 101 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 TEX36Q5VZQ5 186 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 PVRIGQ6DKI7 326 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 TMEM167AQ8TBQ9 72 aa4.13□□□□□ -1.75
CLK1-202ENST00000409403 SEC16AO15027 2179 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 FAM236AA0A1B0GUQ0 79 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 FAM236BA0A1B0GV22 79 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 F5H768 121 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 ATOX1O00244 68 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 IGHV3-9P01782 118 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 CRYGAP11844 174 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 DLX6P56179 175 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 FXYD7P58549 80 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 DEFB121Q5J5C9 76 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 FAM53AQ6NSI3 398 aaPredicted RBP4.12□□□□□ -1.75
CLK1-202ENST00000409403 Q6ZQT7 251 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 MDP1Q86V88 176 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 SCGB3A1Q96QR1 104 aa4.12□□□□□ -1.75
CLK1-202ENST00000409403 ZNF256Q9Y2P7 627 aaPredicted RBP4.12□□□□□ -1.75
CLK1-202ENST00000409403 IGLV2-18A0A075B6J9 118 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 TRBV30A0A0K0K1B3 111 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 F8WDY8 70 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 SMKR1H3BMG3 65 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 CCL21O00585 134 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 TIMM8AO60220 97 aaPredicted RBP4.11□□□□□ -1.75
CLK1-202ENST00000409403 PPP1R17O96001 155 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 ORM1P02763 201 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 CFC1BP0CG36 223 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 CFC1P0CG37 223 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 COX7CP15954 63 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 EBI3Q14213 229 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 ZNF56Q15929 161 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 C2orf82Q6UX34 121 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 SIGLEC15Q6ZMC9 328 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 IL17RELQ6ZVW7 336 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 LINC00643Q86TS7 51 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 RNF185Q96GF1 192 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 DOCK7Q96N67 2140 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 CHCHD5Q9BSY4 110 aa4.11□□□□□ -1.75
CLK1-202ENST00000409403 ZNF407Q9C0G0 2248 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 RYR2Q92736 4967 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 A0A0J9YY99 117 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 A0A1B0GUV1 79 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 SRRM5B3KS81 715 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 IGHV3-30P01768 117 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 TRACP01848 142 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 CGB3P0DN86 165 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 CGB7P0DN87 165 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 IGHV3-30-5P0DP03 117 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 COX6A1P12074 109 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 LYZP61626 148 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 ZNF415Q09FC8 603 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 Q1RN00 199 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 ZNF833PQ6ZTB9 187 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 C9orf139Q6ZV77 190 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 CD177Q8N6Q3 437 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 SLC25A29Q8N8R3 303 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 FDCSPQ8NFU4 85 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 KIR2DL5BQ8NHK3 375 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 TOMM6Q96B49 74 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 IMMP1LQ96LU5 166 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 DUX3Q96PT4 197 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 SHANK2-AS3Q9BTD1 123 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 LINC00574Q9H8X3 128 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 UBR4Q5T4S7 5183 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 IGHV1-69DA0A0B4J2H0 117 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 H3BRN7 92 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 BUB3O43684 328 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 IGHV3-33P01772 117 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 CRYGDP07320 174 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 CRIP1P50238 77 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 WT1-ASQ06250 92 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 DEFB113Q30KQ7 82 aa4.1□□□□□ -1.75
CLK1-202ENST00000409403 EXOC3-AS1Q8N2X6 119 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms