RNA–Protein interactions for RNA: ENST00000405807.8

COL4A3BP-204, Transcript of collagen type IV alpha 3 binding protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A3BP, Length 2,843 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-204ENST00000405807 VKORC1Q9BQB6 163 aa12.18□□□□□ -0.46
COL4A3BP-204ENST00000405807 APC2O95996 2303 aa12.18□□□□□ -0.46
COL4A3BP-204ENST00000405807 TCF15Q12870 199 aa12.18□□□□□ -0.46
COL4A3BP-204ENST00000405807 C16orf92Q96LL3 132 aa12.18□□□□□ -0.46
COL4A3BP-204ENST00000405807 M0R381 172 aa12.17□□□□□ -0.46
COL4A3BP-204ENST00000405807 ATP6V0E1O15342 81 aa12.17□□□□□ -0.46
COL4A3BP-204ENST00000405807 TRBV7-1A0A0A6YYK4 115 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 AVPP01185 164 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 S100A4P26447 101 aaKnown RBP12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 LINC01561Q8N1V8 128 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 U3KQE9 123 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 PRR9Q5T870 116 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 LINC00643Q86TS7 51 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 RPL39LQ96EH5 51 aaKnown RBP12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 PIEZO2Q9H5I5 2752 aa12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 RIF1Q5UIP0 2472 aaKnown RBP12.16□□□□□ -0.46
COL4A3BP-204ENST00000405807 PPP1R17O96001 155 aa12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 P0DMU3 169 aa12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 FAM231AP0DMU4 169 aa12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 FAM231CP0DMU5 169 aa12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 C14orf178Q8N769 122 aaPredicted RBP12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 PHLDA3Q9Y5J5 127 aa12.15□□□□□ -0.46
COL4A3BP-204ENST00000405807 TRAV21A0A0B4J279 112 aa12.15□□□□□ -0.47
COL4A3BP-204ENST00000405807 COX6B1P14854 86 aa12.15□□□□□ -0.47
COL4A3BP-204ENST00000405807 C9orf139Q6ZV77 190 aa12.15□□□□□ -0.47
COL4A3BP-204ENST00000405807 PRIMA1Q86XR5 153 aa12.15□□□□□ -0.47
COL4A3BP-204ENST00000405807 SMCR5Q8TEV8 140 aa12.15□□□□□ -0.47
COL4A3BP-204ENST00000405807 MGPP08493 103 aa12.14□□□□□ -0.47
COL4A3BP-204ENST00000405807 DEFB121Q5J5C9 76 aa12.14□□□□□ -0.47
COL4A3BP-204ENST00000405807 PAPPA-AS1Q5QFB9 102 aa12.14□□□□□ -0.47
COL4A3BP-204ENST00000405807 C5orf38Q86SI9 138 aa12.14□□□□□ -0.47
COL4A3BP-204ENST00000405807 UPK3BQ9BT76 320 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 BEX4Q9NWD9 120 aaPredicted RBP12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 TP53TG1Q9Y2A0 90 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 G3V318 75 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 IGHV3-33P01772 117 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 IGF1P05019 195 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 C20orf173Q96LM9 149 aa12.13□□□□□ -0.47
COL4A3BP-204ENST00000405807 ASH1LQ9NR48 2969 aaKnown RBP12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 H7C423 109 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 ITLN2Q8WWU7 325 aaPredicted RBP12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 RNF223E7ERA6 249 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 ACYP1P07311 99 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 MED14OSP0DP75 135 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 GRNP28799 593 aaKnown RBP12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 ZFAND2AQ8N6M9 145 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 KLHL30-AS1Q8NEE0 82 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 BRK1Q8WUW1 75 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 RETNQ9HD89 108 aa12.12□□□□□ -0.47
COL4A3BP-204ENST00000405807 SPRY2O43597 315 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 IGHV3-30P01768 117 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 IGHV3-30-5P0DP03 117 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 CXCL5P42830 114 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 Q1RN00 199 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 TIRAPP58753 221 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 HIST1H4AP62805 103 aaKnown RBP12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 ACACAQ13085 2346 aa12.11□□□□□ -0.47
COL4A3BP-204ENST00000405807 IGHV1-69DA0A0B4J2H0 117 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 ZFP36P26651 326 aaKnown RBP12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 FBXL19-AS1Q494R0 122 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 LINC00482Q8N8I6 264 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 BSNQ9UPA5 3926 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 A0A0J9YY99 117 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 H3BT86 120 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 GPHB5Q86YW7 130 aa12.1□□□□□ -0.47
COL4A3BP-204ENST00000405807 UBE2E1P51965 193 aa12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 FAM19A1Q7Z5A9 133 aa12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 SERP2Q8N6R1 65 aa12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 NBASA2RRP1 2371 aa12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 C11orf86A6NJI1 115 aa12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 PTPRZ1P23471 2315 aaPredicted RBP12.09□□□□□ -0.47
COL4A3BP-204ENST00000405807 NPC2P61916 151 aa12.08□□□□□ -0.48
COL4A3BP-204ENST00000405807 ANKRD11Q6UB99 2663 aaPredicted RBP12.08□□□□□ -0.48
COL4A3BP-204ENST00000405807 IGLV4-69A0A075B6H9 119 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 RNASE4P34096 147 aaKnown RBP12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 C11orf71Q6IPW1 123 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 Q6ZS46 218 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 ABCA4P78363 2273 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 TMEM89A2RUT3 159 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 PEMTQ9UBM1 199 aa12.07□□□□□ -0.48
COL4A3BP-204ENST00000405807 GNRH2O43555 120 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 TSHBP01222 138 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 RPL18AQ02543 176 aaKnown RBP12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 TMEM141Q96I45 108 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 C16orf95Q9H693 158 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 IGIPA6NJ69 53 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 ZNF561-AS1K7EIQ3 104 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 PSMB8P28062 276 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 SLC25A29Q8N8R3 303 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 MAP1AP78559 2803 aaPredicted RBP12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 IGHV4OR15-8A0A075B7B6 117 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 A0A087WW49 117 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 EIF4EBP3O60516 100 aaPredicted RBP12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 RNASE3P12724 160 aaKnown RBP12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 RHOHQ15669 191 aa12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 TMEM263Q8WUH6 116 aaKnown RBP12.06□□□□□ -0.48
COL4A3BP-204ENST00000405807 ANKHD1Q8IWZ3 2542 aaKnown RBP12.05□□□□□ -0.48
COL4A3BP-204ENST00000405807 TRAV12-2A0A075B6T6 113 aa12.05□□□□□ -0.48
COL4A3BP-204ENST00000405807 FAM223BA6NKX1 122 aa12.05□□□□□ -0.48
COL4A3BP-204ENST00000405807 SAA4P35542 130 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms