RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 FRZBQ92765 325 aa16.45■□□□□ 0.22
TSPAN4-203ENST00000397397 MRAP2Q96G30 205 aa16.45■□□□□ 0.22
TSPAN4-203ENST00000397397 CSMD3Q7Z407 3707 aa16.44■□□□□ 0.22
TSPAN4-203ENST00000397397 MRPL23Q16540 153 aaKnown RBP16.44■□□□□ 0.22
TSPAN4-203ENST00000397397 GNB1LQ9BYB4 327 aa16.44■□□□□ 0.22
TSPAN4-203ENST00000397397 SMKR1H3BMG3 65 aa16.43■□□□□ 0.22
TSPAN4-203ENST00000397397 NEXN-AS1Q8NBZ9 246 aa16.43■□□□□ 0.22
TSPAN4-203ENST00000397397 APLNQ9ULZ1 77 aa16.43■□□□□ 0.22
TSPAN4-203ENST00000397397 A0A096LPF7 62 aa16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 NCR2O95944 276 aa16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 HLA-DQA1P01909 254 aa16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 SRIP30626 198 aa16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 RPL36AP83881 106 aaKnown RBP16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 ZNRF2Q8NHG8 242 aa16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 RPL36ALQ969Q0 106 aaKnown RBP16.42■□□□□ 0.22
TSPAN4-203ENST00000397397 GAS8-AS1O95177 125 aa16.41■□□□□ 0.22
TSPAN4-203ENST00000397397 CKS2P33552 79 aa16.41■□□□□ 0.22
TSPAN4-203ENST00000397397 TCTAP57738 103 aa16.41■□□□□ 0.22
TSPAN4-203ENST00000397397 RPL39LQ96EH5 51 aaKnown RBP16.41■□□□□ 0.22
TSPAN4-203ENST00000397397 NIT2Q9NQR4 276 aa16.41■□□□□ 0.22
TSPAN4-203ENST00000397397 APCSP02743 223 aa16.4■□□□□ 0.22
TSPAN4-203ENST00000397397 DNAJC30Q96LL9 226 aa16.4■□□□□ 0.22
TSPAN4-203ENST00000397397 TNFRSF18Q9Y5U5 241 aa16.4■□□□□ 0.22
TSPAN4-203ENST00000397397 TRBV7-3A0A075B6L6 115 aa16.39■□□□□ 0.21
TSPAN4-203ENST00000397397 MT-ND6P03923 174 aa16.39■□□□□ 0.21
TSPAN4-203ENST00000397397 OR10J3Q5JRS4 329 aa16.39■□□□□ 0.21
TSPAN4-203ENST00000397397 D6R8Y8 96 aa16.38■□□□□ 0.21
TSPAN4-203ENST00000397397 LINC00694P0DN24 101 aa16.38■□□□□ 0.21
TSPAN4-203ENST00000397397 MRPL18Q9H0U6 180 aaKnown RBP16.38■□□□□ 0.21
TSPAN4-203ENST00000397397 PPBPP02775 128 aa16.37■□□□□ 0.21
TSPAN4-203ENST00000397397 RPS10P46783 165 aaKnown RBP16.37■□□□□ 0.21
TSPAN4-203ENST00000397397 NEGR1Q7Z3B1 354 aa16.37■□□□□ 0.21
TSPAN4-203ENST00000397397 SH2D6Q7Z4S9 175 aa16.37■□□□□ 0.21
TSPAN4-203ENST00000397397 UBE2D3P61077 147 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 UBE2D2P62837 147 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 ORMDL3Q8N138 153 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 ATP6V0E2Q8NHE4 81 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 TRAPPC1Q9Y5R8 145 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 COLCA2A8K830 154 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 PPP1R17O96001 155 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 FABP9Q0Z7S8 132 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 KIAA1644Q3SXP7 199 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 NRACQ8N912 160 aa16.36■□□□□ 0.21
TSPAN4-203ENST00000397397 RYR3Q15413 4870 aa16.35■□□□□ 0.21
TSPAN4-203ENST00000397397 PRELID3AQ96N28 172 aa16.35■□□□□ 0.21
TSPAN4-203ENST00000397397 PLECQ15149 4684 aaKnown RBP16.34■□□□□ 0.21
TSPAN4-203ENST00000397397 TRBV6-5A0A0K0K1A5 114 aa16.34■□□□□ 0.21
TSPAN4-203ENST00000397397 ST20Q9HBF5 79 aa16.34■□□□□ 0.21
TSPAN4-203ENST00000397397 IGHV3-38A0A0C4DH36 116 aa16.32■□□□□ 0.2
TSPAN4-203ENST00000397397 TNFRSF6BO95407 300 aa16.32■□□□□ 0.2
TSPAN4-203ENST00000397397 NPYP01303 97 aa16.32■□□□□ 0.2
TSPAN4-203ENST00000397397 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.32■□□□□ 0.2
TSPAN4-203ENST00000397397 ESRGQ1W209 222 aa16.31■□□□□ 0.2
TSPAN4-203ENST00000397397 LYPD5Q6UWN5 251 aa16.31■□□□□ 0.2
TSPAN4-203ENST00000397397 GTSF1LQ9H1H1 148 aa16.31■□□□□ 0.2
TSPAN4-203ENST00000397397 SDHAF1A6NFY7 115 aa16.3■□□□□ 0.2
TSPAN4-203ENST00000397397 RAB5AP20339 215 aa16.3■□□□□ 0.2
TSPAN4-203ENST00000397397 DAZ4Q86SG3 579 aaKnown RBP16.3■□□□□ 0.2
TSPAN4-203ENST00000397397 DAZ3Q9NR90 486 aaKnown RBP16.3■□□□□ 0.2
TSPAN4-203ENST00000397397 SACSQ9NZJ4 4579 aa16.3■□□□□ 0.2
TSPAN4-203ENST00000397397 PHOX2AO14813 284 aa16.29■□□□□ 0.2
TSPAN4-203ENST00000397397 SUMO2P61956 95 aaKnown RBP16.29■□□□□ 0.2
TSPAN4-203ENST00000397397 LAMTOR2Q9Y2Q5 125 aa16.29■□□□□ 0.2
TSPAN4-203ENST00000397397 CCL18P55774 89 aa16.28■□□□□ 0.2
TSPAN4-203ENST00000397397 C20orf78Q9BR46 151 aa16.28■□□□□ 0.2
TSPAN4-203ENST00000397397 TMEM70Q9BUB7 260 aa16.28■□□□□ 0.2
TSPAN4-203ENST00000397397 LYSTQ99698 3801 aa16.28■□□□□ 0.2
TSPAN4-203ENST00000397397 PMCHP20382 165 aa16.27■□□□□ 0.19
TSPAN4-203ENST00000397397 POLR2KP53803 58 aaKnown RBP16.27■□□□□ 0.19
TSPAN4-203ENST00000397397 TIRAPP58753 221 aa16.27■□□□□ 0.19
TSPAN4-203ENST00000397397 UBE2DNLQ8IWF7 75 aa16.27■□□□□ 0.19
TSPAN4-203ENST00000397397 ALKBH7Q9BT30 221 aaPredicted RBP16.27■□□□□ 0.19
TSPAN4-203ENST00000397397 TENM2Q9NT68 2774 aa16.26■□□□□ 0.19
TSPAN4-203ENST00000397397 DEFB104AQ8WTQ1 72 aa16.26■□□□□ 0.19
TSPAN4-203ENST00000397397 MAP1LC3AQ9H492 121 aa16.26■□□□□ 0.19
TSPAN4-203ENST00000397397 LINC00588Q9Y4M8 146 aa16.26■□□□□ 0.19
TSPAN4-203ENST00000397397 I3L3M4 83 aa16.25■□□□□ 0.19
TSPAN4-203ENST00000397397 VCYO14598 125 aa16.25■□□□□ 0.19
TSPAN4-203ENST00000397397 LOC389332A0A1B0GUA5 103 aa16.24■□□□□ 0.19
TSPAN4-203ENST00000397397 TRGC2P03986 189 aa16.24■□□□□ 0.19
TSPAN4-203ENST00000397397 COTL1Q14019 142 aa16.24■□□□□ 0.19
TSPAN4-203ENST00000397397 TMEM97Q5BJF2 176 aa16.24■□□□□ 0.19
TSPAN4-203ENST00000397397 TRBV27A0A0K0K1C4 114 aa16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 RPL32P62910 135 aaKnown RBP16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 LELP1Q5T871 98 aa16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 SMIM2Q9BVW6 85 aa16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 MRPS16Q9Y3D3 137 aaKnown RBP16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 RYR2Q92736 4967 aa16.23■□□□□ 0.19
TSPAN4-203ENST00000397397 NTM-AS1Q6ZSK4 140 aa16.21■□□□□ 0.19
TSPAN4-203ENST00000397397 TRBV6-8A0A0A6YYG3 113 aa16.2■□□□□ 0.18
TSPAN4-203ENST00000397397 PRSS47A8MTI9 375 aa16.2■□□□□ 0.18
TSPAN4-203ENST00000397397 LGALS9CQ6DKI2 356 aa16.2■□□□□ 0.18
TSPAN4-203ENST00000397397 KIR2DL4Q99706 377 aa16.2■□□□□ 0.18
TSPAN4-203ENST00000397397 TRAV8-6A0A0B4J262 113 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 TSHBP01222 138 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 ALMS1Q8TCU4 4167 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 TRBV25-1A0A075B6N4 114 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 IGHV1-24A0A0C4DH33 117 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 LCE6AA0A183 80 aa16.19■□□□□ 0.18
TSPAN4-203ENST00000397397 FCER1GP30273 86 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms