RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 SPRY4Q9C004 299 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 PRO0255Q9UI72 69 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 MUSTN1Q8IVN3 82 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 CITED2Q99967 270 aaPredicted RBP4.19□□□□□ -1.74
VPS13C-204ENST00000395898 BDP1A6H8Y1 2624 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 GATA1P15976 413 aaPredicted RBP4.19□□□□□ -1.74
VPS13C-204ENST00000395898 ATOX1O00244 68 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 RBM3P98179 157 aaKnown RBP4.19□□□□□ -1.74
VPS13C-204ENST00000395898 SONP18583 2426 aaKnown RBP4.19□□□□□ -1.74
VPS13C-204ENST00000395898 UTRNP46939 3433 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 CLPSL1A2RUU4 121 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 IGLL5B9A064 214 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 NREPQ16612 68 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 TEN1Q86WV5 123 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 SMIM20Q8N5G0 67 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 PDE6GP18545 87 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 PATE2Q6UY27 113 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 E7EUB6 86 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 LGALS9O00182 355 aa4.19□□□□□ -1.74
VPS13C-204ENST00000395898 LOXL1Q08397 574 aaPredicted RBP4.18□□□□□ -1.74
VPS13C-204ENST00000395898 Q8N7P7 452 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 SIRPDQ9H106 197 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 ATRXP46100 2492 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 H7C423 109 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 LINC00574Q9H8X3 128 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 ZFP36P26651 326 aaKnown RBP4.18□□□□□ -1.74
VPS13C-204ENST00000395898 MP68P56378 58 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 ACACBO00763 2458 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 UBE2AP49459 152 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 C14orf177Q52M58 125 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 DIRC1Q969H9 104 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 F8W735 103 aaPredicted RBP4.18□□□□□ -1.74
VPS13C-204ENST00000395898 NDUFA11Q86Y39 141 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 NAV3Q8IVL0 2385 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 A0A0J9YX75 114 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 SMIM9A6NGZ8 99 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 RPL39P62891 51 aaKnown RBP4.18□□□□□ -1.74
VPS13C-204ENST00000395898 MDFICQ9P1T7 246 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 TNFRSF13BO14836 293 aaPredicted RBP4.18□□□□□ -1.74
VPS13C-204ENST00000395898 A0A0J9YXV3 536 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 LRRC75A-AS1Q8N1F1 130 aa4.18□□□□□ -1.74
VPS13C-204ENST00000395898 MUC22E2RYF6 1773 aaPredicted RBP4.17□□□□□ -1.74
VPS13C-204ENST00000395898 CHKB-CPT1BH3BT56 60 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 PRB1P04280 392 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 A0A1B0GX51 115 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV3-30P01768 117 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV3-33P01772 117 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV3-30-3P0DP02 117 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV3-30-5P0DP03 117 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 SPAG11BQ08648 103 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 MSRB1Q9NZV6 116 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 ODF1Q14990 250 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 DEFB135Q30KP9 77 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 FANCD2OSQ96PS1 177 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV4-4A0A075B6R2 117 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 IGF1P05019 195 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 COL4A3Q01955 1670 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 H3BT86 120 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 TMEM61Q8N0U2 210 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 KLK12Q9UKR0 248 aa4.17□□□□□ -1.74
VPS13C-204ENST00000395898 PRRC2AP48634 2157 aaKnown RBP4.16□□□□□ -1.74
VPS13C-204ENST00000395898 C19orf71A6NCJ1 209 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 LINC01620Q4KN68 170 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 MIR7-3HGQ8N6C7 128 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 MAP6D1Q9H9H5 199 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 A6NDX4 124 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 LYRM9A8MSI8 78 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 PSMB8P28062 276 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 UNQ9165/PRO28630Q6UXU0 137 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 SPRY2O43597 315 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 Q8NA96 180 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 PRAC2D3DTV9 90 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 TRBV10-2A0A0K0K1G8 114 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 ANKRD39Q53RE8 183 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 DNAJC9-AS1A6NH13 148 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 C11orf45Q8TAV5 145 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 PRORYQ9H606 182 aa4.16□□□□□ -1.74
VPS13C-204ENST00000395898 CENPFP49454 3210 aa4.15□□□□□ -1.74
VPS13C-204ENST00000395898 SPATA12Q7Z6I5 190 aa4.15□□□□□ -1.74
VPS13C-204ENST00000395898 C20orf203Q8NBC4 194 aa4.15□□□□□ -1.74
VPS13C-204ENST00000395898 NRGNQ92686 78 aa4.15□□□□□ -1.74
VPS13C-204ENST00000395898 TDRG1Q3Y452 100 aa4.15□□□□□ -1.74
VPS13C-204ENST00000395898 IGHV4-28A0A0C4DH34 117 aa4.15□□□□□ -1.75
VPS13C-204ENST00000395898 HIST2H2BDQ6DRA6 164 aa4.15□□□□□ -1.75
VPS13C-204ENST00000395898 FXYD2P54710 66 aa4.15□□□□□ -1.75
VPS13C-204ENST00000395898 MIAQ16674 131 aa4.15□□□□□ -1.75
VPS13C-204ENST00000395898 ESM1Q9NQ30 184 aa4.15□□□□□ -1.75
VPS13C-204ENST00000395898 ODF3BA8MYP8 253 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 PROP1O75360 226 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 Q6YL49 198 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 KIR2DL5BQ8NHK3 375 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 B9D2Q9BPU9 175 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 FAM236AA0A1B0GUQ0 79 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 FAM236BA0A1B0GV22 79 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 A0A1W2PNU3 283 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-204ENST00000395898 MUC4Q99102 2169 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 LECT2O14960 151 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 FOXI1Q12951 378 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 DAND5Q8N907 189 aa4.14□□□□□ -1.75
VPS13C-204ENST00000395898 TRBV12-3P01733 135 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms