RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 POLR2KP53803 58 aaKnown RBP7.62□□□□□ -1.19
LIMA1-201ENST00000341247 SCGB2A2Q13296 93 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 MORN3Q6PF18 240 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-201ENST00000341247 Q9UF83 564 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 GAGE10A6NGK3 116 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 VCYO14598 125 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 SIVA1O15304 175 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 H3BMM0 161 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 PPP1R17O96001 155 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 RNF151Q2KHN1 245 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 HIST1H4GQ99525 98 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 ESM1Q9NQ30 184 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 TENM1Q9UKZ4 2725 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 M0QY20 66 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 LRRC75A-AS1Q8N1F1 130 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 XCL2Q9UBD3 114 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 PEMTQ9UBM1 199 aa7.61□□□□□ -1.19
LIMA1-201ENST00000341247 LINC01587Q99440 93 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 PRADC1Q9BSG0 188 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 TRAV12-1A0A0B4J245 112 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 C9orf118A6NHY6 69 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 C11orf86A6NJI1 115 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 H3BRM9 83 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 TMEM170BQ5T4T1 132 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 C4orf3Q8WVX3 66 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 YAE1D1Q9NRH1 226 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 IGHV3-64A0A075B6Q5 118 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 CD28P10747 220 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 RNF152Q8N8N0 203 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 ODF3Q96PU9 254 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 MAP6D1Q9H9H5 199 aa7.6□□□□□ -1.19
LIMA1-201ENST00000341247 SMIM13P0DJ93 91 aa7.59□□□□□ -1.19
LIMA1-201ENST00000341247 RNASE13Q5GAN3 156 aaKnown RBP7.59□□□□□ -1.19
LIMA1-201ENST00000341247 SCGB1D4Q6XE38 83 aa7.59□□□□□ -1.19
LIMA1-201ENST00000341247 FN1P02751 2386 aaKnown RBP7.59□□□□□ -1.19
LIMA1-201ENST00000341247 TRGV11A0A075B6L2 103 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 ZNF815PA8K554 130 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 DEFB114Q30KQ6 69 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 RAX2Q96IS3 184 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 MRPL16Q9NX20 251 aaKnown RBP7.58□□□□□ -1.2
LIMA1-201ENST00000341247 IGIPA6NJ69 53 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 CEMP1Q6PRD7 247 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-201ENST00000341247 CEND1Q8N111 149 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 Q8N2B8 174 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 POM121L12Q8N7R1 296 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 GAGE12BA1L429 117 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 PLEKHB2Q96CS7 222 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 CITED2Q99967 270 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-201ENST00000341247 HIVEP2P31629 2446 aa7.58□□□□□ -1.2
LIMA1-201ENST00000341247 IGHV3-38A0A0C4DH36 116 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 MYMXA0A1B0GTQ4 84 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 SPAG8Q99932 426 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-201ENST00000341247 CST9LQ9H4G1 147 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 SPCS1Q9Y6A9 102 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 IGLV4-69A0A075B6H9 119 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 TRBV27A0A0K0K1C4 114 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 PMVKQ15126 192 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 SFTA2Q6UW10 78 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 Q6ZSN1 163 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 TRPT1Q86TN4 253 aaKnown RBP7.57□□□□□ -1.2
LIMA1-201ENST00000341247 HIGD1BQ9P298 99 aa7.57□□□□□ -1.2
LIMA1-201ENST00000341247 SAMD5Q5TGI4 173 aa7.56□□□□□ -1.2
LIMA1-201ENST00000341247 PHLDA1Q8WV24 401 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-201ENST00000341247 ZNRF2Q8NHG8 242 aa7.56□□□□□ -1.2
LIMA1-201ENST00000341247 SMR3AQ99954 134 aa7.56□□□□□ -1.2
LIMA1-201ENST00000341247 CCL24O00175 119 aa7.56□□□□□ -1.2
LIMA1-201ENST00000341247 KRTAP1-1Q07627 177 aa7.56□□□□□ -1.2
LIMA1-201ENST00000341247 AZU1P20160 251 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 SRSF9Q13242 221 aaKnown RBP eCLIP7.55□□□□□ -1.2
LIMA1-201ENST00000341247 WFDC10AQ9H1F0 79 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 A0A1W2PPM0 123 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 ODF3L2Q3SX64 289 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 E9PLD3 99 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 I3L3M4 83 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 IGHV3-53P01767 116 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 GTF2H5Q6ZYL4 71 aa7.55□□□□□ -1.2
LIMA1-201ENST00000341247 FABP2P12104 132 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 FOSL1P15407 271 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 STHQ8IWL8 128 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 MTURNQ8N3F0 131 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 TNFRSF18Q9Y5U5 241 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 TRBV6-5A0A0K0K1A5 114 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 TSPEAR-AS2P59090 65 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 K7EP34 96 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 NSUN5P1Q3KNT7 163 aa7.54□□□□□ -1.2
LIMA1-201ENST00000341247 A0A0J9YXV3 536 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 M0R2P5 195 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 SAP30O75446 220 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 ZNF415Q09FC8 603 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 C12orf74Q32Q52 190 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 C20orf203Q8NBC4 194 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 ANK2Q01484 3957 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 RIPPLY3P57055 190 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 C21orf62-AS1Q17RA5 79 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 TMEM141Q96I45 108 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 TM2D2Q9BX73 214 aa7.53□□□□□ -1.2
LIMA1-201ENST00000341247 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-201ENST00000341247 IGKV2-29A2NJV5 120 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-201ENST00000341247 RPL32P62910 135 aaKnown RBP7.53□□□□□ -1.2
LIMA1-201ENST00000341247 LINC01006Q8NI28 216 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms