RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 U3KQE9 123 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 PSCAO43653 123 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 NEXN-AS1Q8NBZ9 246 aa7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 HAMPP81172 84 aa7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 PIK3CD-AS1Q5SR53 167 aa7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 Q6ZUT4 128 aa7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 TMEM263Q8WUH6 116 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 SELENOKQ9Y6D0 94 aa7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 ATP5EP56381 51 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-202ENST00000336838 NOTCH2Q04721 2471 aa7.9□□□□□ -1.15
CCDC88A-202ENST00000336838 FAM236AA0A1B0GUQ0 79 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 FAM236BA0A1B0GV22 79 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 COX7A2LO14548 114 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 B5MCH6 92 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 KNCNA6PVL3 124 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 WFDC2Q14508 124 aa7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 ANGP03950 147 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 NDUFV3P56181 108 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-202ENST00000336838 TRAV4A0A0B4J268 109 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 CRYGBP07316 175 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 IGHV3-16A0A0C4DH30 117 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 PRR30Q53SZ7 412 aaPredicted RBP7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 MUC7Q8TAX7 377 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 EBI3Q14213 229 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 CCL24O00175 119 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 UQCRQO14949 82 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 FANCD2OSQ96PS1 177 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 A0A0J9YX75 114 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 RITA1Q96K30 269 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 IGF2RP11717 2491 aa7.88□□□□□ -1.15
CCDC88A-202ENST00000336838 IGF1P05019 195 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 MRPL36Q9P0J6 103 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 Q6ZPA2 131 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 NOP10Q9NPE3 64 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 RNF223E7ERA6 249 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 BRWD1-AS2P59051 145 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 ZFYVE26Q68DK2 2539 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 IGHV3-30-3P0DP02 117 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 PYGO1Q9Y3Y4 419 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 HIST2H2BCQ6DN03 193 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 HIST2H2BDQ6DRA6 164 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 IGHV4-4A0A075B6R2 117 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 TRBV30A0A0K0K1B3 111 aa7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 IGKV2-29A2NJV5 120 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 GATA1P15976 413 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-202ENST00000336838 FAM240AA0A1B0GVK7 77 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 INSL3P51460 131 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 A0A1B0GX51 115 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 RBM3P98179 157 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 A0A0J9YXV3 536 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 SIRPDQ9H106 197 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 ANKRD17O75179 2603 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 MSRB1Q9NZV6 116 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 PRB4P10163 310 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 C9orf66Q5T8R8 295 aa7.86□□□□□ -1.15
CCDC88A-202ENST00000336838 TCL1BO95988 128 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 C10orf105Q8TEF2 133 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 MP68P56378 58 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 SPRNQ5BIV9 151 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 SEM1Q6ZVN7 128 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 IGHV3-38A0A0C4DH36 116 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 FAM222AQ5U5X8 452 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 NDUFC1O43677 76 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 XCL1P47992 114 aa7.85□□□□□ -1.15
CCDC88A-202ENST00000336838 E7EUB6 86 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 PSMB8P28062 276 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 GDF5OSQ5U4N7 250 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 Q8N7P7 452 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 TIRAPP58753 221 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 TRBV6-5A0A0K0K1A5 114 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 TRBV27A0A0K0K1C4 114 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 C10orf142B7Z368 130 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 NDUFA1O15239 70 aa7.84□□□□□ -1.15
CCDC88A-202ENST00000336838 RPL39P62891 51 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 TRAV26-1A0A087WT03 109 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 LY6LH3BQJ8 138 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 IGLV2-11P01706 119 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 C1orf43Q9BWL3 253 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 ASPHD1Q5U4P2 390 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 SP5Q6BEB4 398 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 SMIM9A6NGZ8 99 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 SPART-AS1P0CW21 52 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 RBX1P62877 108 aa7.83□□□□□ -1.16
CCDC88A-202ENST00000336838 Q96MF0 132 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 CCDC140Q96MF4 163 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 USP9XQ93008 2570 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 COL4A2P08572 1712 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV4OR15-8A0A075B7B6 117 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 A0A087WW49 117 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 IBA57-AS1B1ANH7 110 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 DEFB112Q30KQ8 113 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 GYPEP15421 78 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 TP53TG3Q9ULZ0 132 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV4-59P01825 116 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 TMEM61Q8N0U2 210 aa7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 COL27A1Q8IZC6 1860 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-202ENST00000336838 DEFB104AQ8WTQ1 72 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 SS18L2Q9UHA2 77 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 NCOR2Q9Y618 2525 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms