RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 Q8N7P7 452 aa8.83□□□□□ -1
VPS39-201ENST00000318006 H3BQ85 93 aa8.83□□□□□ -1
VPS39-201ENST00000318006 PRB1P04280 392 aa8.83□□□□□ -1
VPS39-201ENST00000318006 IGLC6P0CF74 106 aa8.83□□□□□ -1
VPS39-201ENST00000318006 Q6ZPA2 131 aa8.83□□□□□ -1
VPS39-201ENST00000318006 TEX22C9J3V5 150 aa8.82□□□□□ -1
VPS39-201ENST00000318006 F5H768 121 aa8.82□□□□□ -1
VPS39-201ENST00000318006 DAD1P61803 113 aa8.82□□□□□ -1
VPS39-201ENST00000318006 C16orf54Q6UWD8 224 aa8.82□□□□□ -1
VPS39-201ENST00000318006 VSIG2Q96IQ7 327 aa8.82□□□□□ -1
VPS39-201ENST00000318006 FUSP35637 526 aaKnown RBP eCLIP8.82□□□□□ -1
VPS39-201ENST00000318006 IGHV3-30-3P0DP02 117 aa8.82□□□□□ -1
VPS39-201ENST00000318006 BLCAPP62952 87 aa8.82□□□□□ -1
VPS39-201ENST00000318006 E7EUB6 86 aa8.82□□□□□ -1
VPS39-201ENST00000318006 ZFP36P26651 326 aaKnown RBP8.82□□□□□ -1
VPS39-201ENST00000318006 IGKV1D-37A0A075B6S9 117 aa8.81□□□□□ -1
VPS39-201ENST00000318006 CGB3P0DN86 165 aa8.81□□□□□ -1
VPS39-201ENST00000318006 CGB7P0DN87 165 aa8.81□□□□□ -1
VPS39-201ENST00000318006 MIAQ16674 131 aa8.81□□□□□ -1
VPS39-201ENST00000318006 PIEZO1Q92508 2521 aa8.81□□□□□ -1
VPS39-201ENST00000318006 HIST2H2BCQ6DN03 193 aa8.81□□□□□ -1
VPS39-201ENST00000318006 C2orf91Q6ZV80 131 aa8.81□□□□□ -1
VPS39-201ENST00000318006 DEFB113Q30KQ7 82 aa8.81□□□□□ -1
VPS39-201ENST00000318006 CLPSL2Q6UWE3 100 aa8.81□□□□□ -1
VPS39-201ENST00000318006 C20orf203Q8NBC4 194 aa8.81□□□□□ -1
VPS39-201ENST00000318006 PROP1O75360 226 aa8.8□□□□□ -1
VPS39-201ENST00000318006 WFDC9Q8NEX5 89 aa8.8□□□□□ -1
VPS39-201ENST00000318006 IGKV2D-26A0A0A0MRZ7 120 aa8.8□□□□□ -1
VPS39-201ENST00000318006 ATRXP46100 2492 aa8.8□□□□□ -1
VPS39-201ENST00000318006 NREPQ16612 68 aa8.8□□□□□ -1
VPS39-201ENST00000318006 C5orf56Q8N8D9 126 aa8.8□□□□□ -1
VPS39-201ENST00000318006 CLUHP3Q96NS8 147 aa8.8□□□□□ -1
VPS39-201ENST00000318006 MED12LQ86YW9 2145 aa8.8□□□□□ -1
VPS39-201ENST00000318006 AJUBAQ96IF1 538 aa8.79□□□□□ -1
VPS39-201ENST00000318006 LINC00574Q9H8X3 128 aa8.79□□□□□ -1
VPS39-201ENST00000318006 A0A0J9YXY3 114 aa8.79□□□□□ -1
VPS39-201ENST00000318006 COX7A2LO14548 114 aa8.79□□□□□ -1
VPS39-201ENST00000318006 MP68P56378 58 aa8.79□□□□□ -1
VPS39-201ENST00000318006 RNF152Q8N8N0 203 aa8.79□□□□□ -1
VPS39-201ENST00000318006 C14orf132Q9NPU4 83 aa8.79□□□□□ -1
VPS39-201ENST00000318006 DAZ2Q13117 558 aaKnown RBP8.79□□□□□ -1
VPS39-201ENST00000318006 DAZ4Q86SG3 579 aaKnown RBP8.79□□□□□ -1
VPS39-201ENST00000318006 DAZ3Q9NR90 486 aaKnown RBP8.79□□□□□ -1
VPS39-201ENST00000318006 BRWD1-AS2P59051 145 aa8.79□□□□□ -1
VPS39-201ENST00000318006 MAPKAPK5-AS1Q8N8E1 139 aa8.79□□□□□ -1
VPS39-201ENST00000318006 HTTP42858 3142 aa8.78□□□□□ -1
VPS39-201ENST00000318006 NEXN-AS1Q8NBZ9 246 aa8.78□□□□□ -1
VPS39-201ENST00000318006 FAM236DA0A1B0GTK5 79 aa8.78□□□□□ -1
VPS39-201ENST00000318006 TMEM256-PLSCR3K7ERE1 68 aa8.78□□□□□ -1
VPS39-201ENST00000318006 PSCAO43653 123 aa8.78□□□□□ -1
VPS39-201ENST00000318006 FAM236CP0DP71 79 aa8.78□□□□□ -1
VPS39-201ENST00000318006 DEFB121Q5J5C9 76 aa8.78□□□□□ -1
VPS39-201ENST00000318006 NFE4Q86UQ8 179 aa8.78□□□□□ -1
VPS39-201ENST00000318006 C20orf197Q8N268 126 aa8.78□□□□□ -1
VPS39-201ENST00000318006 Q9HAA7 133 aa8.78□□□□□ -1
VPS39-201ENST00000318006 NOP10Q9NPE3 64 aaKnown RBP8.78□□□□□ -1
VPS39-201ENST00000318006 DYSFO75923 2080 aa8.78□□□□□ -1
VPS39-201ENST00000318006 P0DMU3 169 aa8.78□□□□□ -1
VPS39-201ENST00000318006 FAM231AP0DMU4 169 aa8.78□□□□□ -1
VPS39-201ENST00000318006 FAM231CP0DMU5 169 aa8.78□□□□□ -1
VPS39-201ENST00000318006 SIRPDQ9H106 197 aa8.78□□□□□ -1
VPS39-201ENST00000318006 ZNF80P51504 273 aaPredicted RBP8.78□□□□□ -1
VPS39-201ENST00000318006 TRAV23DV6A0A075B6W5 121 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 A0A0J9YY99 117 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 DEFB136Q30KP8 78 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 C22orf34Q6ZV56 151 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 NACAE9PAV3 2078 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 MDFICQ9P1T7 246 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 A0A096LPF7 62 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 K7EQD1 137 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 NDUFA7O95182 113 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 DEFB105AQ8NG35 78 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 NRGNQ92686 78 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 NCOR2Q9Y618 2525 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 PDE6GP18545 87 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 CFAP126Q5VTH2 177 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 MIR7-3HGQ8N6C7 128 aa8.77□□□□□ -1.01
VPS39-201ENST00000318006 PTPN13Q12923 2485 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 TNCP24821 2201 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 XGP55808 180 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 SDIM1Q6ZPB5 146 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 UBE2DNLQ8IWF7 75 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 HIST2H2BDQ6DRA6 164 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 IMUPQ9GZP8 106 aa8.76□□□□□ -1.01
VPS39-201ENST00000318006 CCL24O00175 119 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 IGHV4-4A0A075B6R2 117 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 TRBV30A0A0K0K1B3 111 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 U3KQK5 164 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 FANCD2OSQ96PS1 177 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 UPK3BQ9BT76 320 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 CCDC179H3BU77 68 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 IGHV3-33P01772 117 aa8.75□□□□□ -1.01
VPS39-201ENST00000318006 PRB2P02812 416 aaPredicted RBP8.75□□□□□ -1.01
VPS39-201ENST00000318006 TRBV12-3P01733 135 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 SLURP1P55000 103 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 IGF2RP11717 2491 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 APOC4P55056 127 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 LRP4O75096 1905 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 TRBV7-3A0A075B6L6 115 aa8.74□□□□□ -1.01
VPS39-201ENST00000318006 IGHV4-28A0A0C4DH34 117 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms