RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRYO14603 147 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 UBE2D1P51668 147 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 FOXL2NBQ6ZUU3 175 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 FAM19A3Q7Z5A8 133 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 ADAMTS9Q9P2N4 1935 aa10.84□□□□□ -0.67
CCDC88A-201ENST00000263630 TECTAO75443 2155 aa10.83□□□□□ -0.67
CCDC88A-201ENST00000263630 FHL1Q13642 323 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 CEP192Q8TEP8 1941 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 FXYD2P54710 66 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 FLVCR1-AS1Q8TAF5 88 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 BLCAPP62952 87 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 UBE2D4Q9Y2X8 147 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 HIGD2AQ9BW72 106 aa10.83□□□□□ -0.68
CCDC88A-201ENST00000263630 TMEM263Q8WUH6 116 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-201ENST00000263630 ARTNQ5T4W7 220 aa10.82□□□□□ -0.68
CCDC88A-201ENST00000263630 IGLC6P0CF74 106 aa10.82□□□□□ -0.68
CCDC88A-201ENST00000263630 ENHOQ6UWT2 76 aa10.82□□□□□ -0.68
CCDC88A-201ENST00000263630 TIMM17BO60830 172 aa10.81□□□□□ -0.68
CCDC88A-201ENST00000263630 NDUFA11Q86Y39 141 aa10.81□□□□□ -0.68
CCDC88A-201ENST00000263630 KAAG1Q9UBP8 84 aa10.81□□□□□ -0.68
CCDC88A-201ENST00000263630 SIP14410 1827 aa10.81□□□□□ -0.68
CCDC88A-201ENST00000263630 Q8N9W7 124 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 A0A087WZ39 114 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 TPSG1Q9NRR2 321 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 H7C423 109 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 J3QKU1 62 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 SLURP1P55000 103 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 LRCOL1A6NCL2 159 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 PRR4Q16378 134 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 MDFICQ9P1T7 246 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 TRBV10-1A0A0K0K1A3 114 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 B3GALT5-AS1P59052 145 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 IMUPQ9GZP8 106 aa10.8□□□□□ -0.68
CCDC88A-201ENST00000263630 FAM222AQ5U5X8 452 aa10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 DEFB136Q30KP8 78 aa10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 BRWD3Q6RI45 1802 aa10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 RPL39P62891 51 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 MRPS36P82909 103 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 K7ENP7 123 aa10.79□□□□□ -0.68
CCDC88A-201ENST00000263630 EXPH5Q8NEV8 1989 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 INSL3P51460 131 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 SMAD5-AS1Q9Y6J3 95 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 C15orf65H3BRN8 121 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 TCL1BO95988 128 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 PMAIP1Q13794 54 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 FAM19A1Q7Z5A9 133 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 PRO0255Q9UI72 69 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 UBE2D3P61077 147 aa10.78□□□□□ -0.68
CCDC88A-201ENST00000263630 TNS1Q9HBL0 1735 aaKnown RBP10.77□□□□□ -0.68
CCDC88A-201ENST00000263630 NDUFA7O95182 113 aa10.77□□□□□ -0.68
CCDC88A-201ENST00000263630 VPREB1P12018 145 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 ZNF581Q9P0T4 197 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 NAV3Q8IVL0 2385 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 IGKV1D-37A0A075B6S9 117 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 A0A0J9YWU9 116 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 IGKV2-24A0A0C4DH68 120 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 KIAA1671Q9BY89 1806 aa10.77□□□□□ -0.69
CCDC88A-201ENST00000263630 KIAA1549LQ6ZVL6 1849 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 CTSGP08311 255 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 Q6ZVQ6 151 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 Q8NFD4 153 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 DEFB112Q30KQ8 113 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 RNF185Q96GF1 192 aa10.76□□□□□ -0.69
CCDC88A-201ENST00000263630 UBE2D2P62837 147 aa10.75□□□□□ -0.69
CCDC88A-201ENST00000263630 C4orf3Q8WVX3 66 aa10.75□□□□□ -0.69
CCDC88A-201ENST00000263630 COA6Q5JTJ3 125 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-201ENST00000263630 ODF1Q14990 250 aa10.75□□□□□ -0.69
CCDC88A-201ENST00000263630 CTRLP40313 264 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 TANC1Q9C0D5 1861 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 NFE4Q86UQ8 179 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 IGKV1-17P01599 117 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 SPRY4Q9C004 299 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 IGHV4-30-2A0A087WSY4 118 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 NUP210LQ5VU65 1888 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 CCKP06307 115 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 CRIPAKQ8N1N5 446 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 C11orf45Q8TAV5 145 aa10.74□□□□□ -0.69
CCDC88A-201ENST00000263630 TRBV6-1A0A0K0K1D8 114 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 DEFB135Q30KP9 77 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 C2orf70A6NJV1 201 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 K7EMT4 169 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 ZFAND2AQ8N6M9 145 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 TRBV27A0A0K0K1C4 114 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 IGFL3Q6UXB1 125 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 ESM1Q9NQ30 184 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 SPRY2O43597 315 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 CRYGDP07320 174 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 DHRS4-AS1Q9P1J3 65 aa10.73□□□□□ -0.69
CCDC88A-201ENST00000263630 RNASE8Q8TDE3 154 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-201ENST00000263630 C1orf158Q8N1D5 194 aa10.72□□□□□ -0.69
CCDC88A-201ENST00000263630 WT1P19544 449 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-201ENST00000263630 REG3AQ06141 175 aa10.71□□□□□ -0.69
CCDC88A-201ENST00000263630 DEFB113Q30KQ7 82 aa10.71□□□□□ -0.7
CCDC88A-201ENST00000263630 RNF144BQ7Z419 303 aa10.71□□□□□ -0.7
CCDC88A-201ENST00000263630 A0A096LNI7 61 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 TMEM89A2RUT3 159 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 SCXQ7RTU7 201 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 SPATA12Q7Z6I5 190 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 IGLV1-44P01699 117 aa10.7□□□□□ -0.7
CCDC88A-201ENST00000263630 PTH2Q96A98 100 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms