RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SLC25A26Q70HW3 274 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 STX19Q8N4C7 294 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 FAM24BQ8N5W8 94 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 OR13C6PQ8NH95 151 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 PPDPFLQ8WWR9 84 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 IFI27L1Q96BM0 104 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 HOPXQ9BPY8 73 aaPredicted RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 SMIM7Q9BQ49 75 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 WFDC6Q9BQY6 131 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 LXNQ9BS40 222 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 BATF3Q9NR55 127 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 TMEM242Q9NWH2 141 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 MED11Q9P086 117 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 PRO0255Q9UI72 69 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 NDUFAF1Q9Y375 327 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 MED31Q9Y3C7 131 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 DNAJC15Q9Y5T4 150 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 USP54Q70EL1 1684 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 RREB1Q92766 1687 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 ATG2AQ2TAZ0 1938 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 ZMYM4Q5VZL5 1548 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 DLC1Q96QB1 1528 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 N4BP2Q86UW6 1770 aaPredicted RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 DLEC1Q9Y238 1755 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 EIF3AQ14152 1382 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 LRP5O75197 1615 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 NHSL1Q5SYE7 1610 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 ANK1P16157 1881 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 PTPRMP28827 1452 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 GOLGA3Q08378 1498 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 GOLGA4Q13439 2230 aaKnown RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 DOPEY1Q5JWR5 2465 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 PCNX1Q96RV3 2341 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 AKAP13Q12802 2813 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 ARHGAP31Q2M1Z3 1444 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 CUBNO60494 3623 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 KIDINS220Q9ULH0 1771 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TRAV2A0A0B4J234 112 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 A0A0D9SFI3 127 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TRBV10-3A0A0K0K1G6 114 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 MAP1LC3B2A6NCE7 125 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TMEM238C9JI98 176 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 PPP5D1E7EU14 171 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 I3L2K1 104 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 PIN1P1O15428 100 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 KALRNO60229 2985 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 BCE1O60756 84 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 IFNA21P01568 189 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 SPINK8P0C7L1 97 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 COX4I1P13073 169 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 ACYP2P14621 99 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 SRP9P49458 86 aaKnown RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 AKR1D1P51857 326 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 MRPS25P82663 173 aaKnown RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 UNQ5815/PRO19632Q6UWF5 114 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TMEM91Q6ZNR0 172 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 NDUFA11Q86Y39 141 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 UBE2DNLQ8IWF7 75 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 Q8IZM0 81 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 C4orf33Q8N1A6 199 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 C20orf197Q8N268 126 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 COX7B2Q8TF08 81 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 THEM6Q8WUY1 208 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 PPP1R1CQ8WVI7 109 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 DYDC1Q8WWB3 177 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 CEP19Q96LK0 163 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 METTL1Q9UBP6 276 aaKnown RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 LAMTOR2Q9Y2Q5 125 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 V9GYV3 84 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 CAMSAP1Q5T5Y3 1602 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 BIVM-ERCC5R4GMW8 1640 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 MED23Q9ULK4 1368 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TNS1Q9HBL0 1735 aaKnown RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 ARAP1Q96P48 1450 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 TNRC18O15417 2968 aaPredicted RBP-0.36□□□□□ -2.47
VPS35-212ENST00000640313 LAMA1P25391 3075 aa-0.36□□□□□ -2.47
VPS35-212ENST00000640313 MYO18BQ8IUG5 2567 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 REV3LO60673 3130 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 NUP210LQ5VU65 1888 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TCRBV3S1A0A5B6 114 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 M0R2P5 195 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PGRMC1O00264 195 aaKnown RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 DEGS1O15121 323 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 APOC1P02654 83 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 MT-ND4LP03901 98 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TCRAP04437 139 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 S100A6P06703 90 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 SPRR1BP22528 89 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 SPRR2EP22531 72 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 GCHFRP30047 84 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 SPRR2AP35326 72 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TCTAP57738 103 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PCBD1P61457 104 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 HAMPP81172 84 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 MRPS15P82914 257 aaKnown RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 RBM3P98179 157 aaKnown RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PLGLB1Q02325 96 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TMED2Q15363 201 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 SLC48A1Q6P1K1 146 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 ATP11AUNQ6ZP68 121 aa-0.37□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms