RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 APOC4P55056 127 aa14.46□□□□□ -0.09
CLN3-250ENST00000636839 SYT8Q8NBV8 401 aa14.46□□□□□ -0.09
CLN3-250ENST00000636839 IL17DQ8TAD2 202 aa14.46□□□□□ -0.09
CLN3-250ENST00000636839 X6R8D5 127 aa14.46□□□□□ -0.09
CLN3-250ENST00000636839 CRYGDP07320 174 aa14.46□□□□□ -0.1
CLN3-250ENST00000636839 EMP1P54849 157 aa14.46□□□□□ -0.1
CLN3-250ENST00000636839 RRN3P1Q2M238 152 aa14.46□□□□□ -0.1
CLN3-250ENST00000636839 DPH3P1Q9H4G8 78 aa14.46□□□□□ -0.1
CLN3-250ENST00000636839 NOP10Q9NPE3 64 aaKnown RBP14.46□□□□□ -0.1
CLN3-250ENST00000636839 IGHV3-73A0A0B4J1V6 119 aa14.45□□□□□ -0.1
CLN3-250ENST00000636839 Q0VG73 95 aa14.45□□□□□ -0.1
CLN3-250ENST00000636839 BAGE3Q86Y29 109 aa14.45□□□□□ -0.1
CLN3-250ENST00000636839 PRELID3AQ96N28 172 aa14.45□□□□□ -0.1
CLN3-250ENST00000636839 IFITM10A6NMD0 228 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 SERF1AO75920 110 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 NPYP01303 97 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 ORMDL3Q8N138 153 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 HOXA5P20719 270 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 COA6Q5JTJ3 125 aaKnown RBP14.44□□□□□ -0.1
CLN3-250ENST00000636839 Q6ZTI0 123 aa14.44□□□□□ -0.1
CLN3-250ENST00000636839 TRGV1A0A0A0MS02 117 aa14.43□□□□□ -0.1
CLN3-250ENST00000636839 URB1-AS1Q96HZ7 61 aa14.43□□□□□ -0.1
CLN3-250ENST00000636839 LOC389332A0A1B0GUA5 103 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 C16orf74Q96GX8 76 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 SPXQ9BT56 116 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 DNHD1Q96M86 4753 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 DEFB4AO15263 64 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 SMIM17P0DL12 118 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 OR10J3Q5JRS4 329 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 HIST3H2BBQ8N257 126 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 POM121L12Q8N7R1 296 aa14.42□□□□□ -0.1
CLN3-250ENST00000636839 OR11H2Q8NH07 326 aa14.41□□□□□ -0.1
CLN3-250ENST00000636839 RASL10AQ92737 203 aa14.41□□□□□ -0.1
CLN3-250ENST00000636839 RPL39LQ96EH5 51 aaKnown RBP14.41□□□□□ -0.1
CLN3-250ENST00000636839 F5H697 171 aa14.41□□□□□ -0.1
CLN3-250ENST00000636839 UBE2CO00762 179 aa14.41□□□□□ -0.1
CLN3-250ENST00000636839 NRACQ8N912 160 aa14.41□□□□□ -0.1
CLN3-250ENST00000636839 PCP4L1A6NKN8 68 aa14.4□□□□□ -0.1
CLN3-250ENST00000636839 TNFRSF6BO95407 300 aa14.4□□□□□ -0.1
CLN3-250ENST00000636839 CFAP126Q5VTH2 177 aa14.4□□□□□ -0.1
CLN3-250ENST00000636839 NIT1Q86X76 327 aa14.4□□□□□ -0.1
CLN3-250ENST00000636839 RETNQ9HD89 108 aa14.4□□□□□ -0.1
CLN3-250ENST00000636839 SUMO4Q6EEV6 95 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 Q6ZSN1 163 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 NACAE9PAV3 2078 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 A8MZ25 164 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 RIPPLY3P57055 190 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 DAZ2Q13117 558 aaKnown RBP14.39□□□□□ -0.11
CLN3-250ENST00000636839 UFSP1Q6NVU6 142 aa14.39□□□□□ -0.11
CLN3-250ENST00000636839 IFI27P40305 119 aaPredicted RBP14.38□□□□□ -0.11
CLN3-250ENST00000636839 ZNF56Q15929 161 aa14.38□□□□□ -0.11
CLN3-250ENST00000636839 RNASEKQ6P5S7 137 aaKnown RBP14.38□□□□□ -0.11
CLN3-250ENST00000636839 PTH2Q96A98 100 aa14.38□□□□□ -0.11
CLN3-250ENST00000636839 GAGE12BA1L429 117 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 GAGE7O76087 117 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 PPBPP02775 128 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 GAGE12FP0CL80 117 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 GAGE12GP0CL81 117 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 GAGE12IP0CL82 117 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 RNF183Q96D59 192 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 Q9UF83 564 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 K7EIL1 84 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 IGHV3-53P01767 116 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 MRAP2Q96G30 205 aa14.37□□□□□ -0.11
CLN3-250ENST00000636839 PMCHL1Q16048 86 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 Q6ZWC4 215 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 FAM19A2Q8N3H0 131 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 OVOL2Q9BRP0 275 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 A8MWV9 139 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 RS1O15537 224 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 P0DMU3 169 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 FAM231AP0DMU4 169 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 FAM231CP0DMU5 169 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 KPRPQ5T749 579 aaPredicted RBP14.36□□□□□ -0.11
CLN3-250ENST00000636839 ZNF479Q96JC4 524 aa14.36□□□□□ -0.11
CLN3-250ENST00000636839 IGHV4-28A0A0C4DH34 117 aa14.35□□□□□ -0.11
CLN3-250ENST00000636839 FABP4P15090 132 aa14.35□□□□□ -0.11
CLN3-250ENST00000636839 PIK3CD-AS1Q5SR53 167 aa14.35□□□□□ -0.11
CLN3-250ENST00000636839 HIST1H2BLQ99880 126 aa14.35□□□□□ -0.11
CLN3-250ENST00000636839 SMIM9A6NGZ8 99 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 PRSS3P2Q8NHM4 247 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 DEFB104AQ8WTQ1 72 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 M0QY20 66 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 LINC00614P0C842 121 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 LGALS9BQ3B8N2 356 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 Q8NAQ8 132 aa14.34□□□□□ -0.11
CLN3-250ENST00000636839 DEFB130BP0DP73 79 aa14.33□□□□□ -0.12
CLN3-250ENST00000636839 DEFB130AP0DP74 79 aa14.33□□□□□ -0.12
CLN3-250ENST00000636839 OR4C5Q8NGB2 326 aa14.33□□□□□ -0.12
CLN3-250ENST00000636839 C12orf57Q99622 126 aa14.33□□□□□ -0.12
CLN3-250ENST00000636839 ESDP10768 282 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 PMCHP20382 165 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 S100A2P29034 98 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 DEFB121Q5J5C9 76 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 NEGR1Q7Z3B1 354 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 SBSPONQ8IVN8 264 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 MAP1LC3AQ9H492 121 aa14.32□□□□□ -0.12
CLN3-250ENST00000636839 TRGV2A0A075B6R0 118 aa14.31□□□□□ -0.12
CLN3-250ENST00000636839 AKR1D1P51857 326 aa14.31□□□□□ -0.12
CLN3-250ENST00000636839 LAMTOR2Q9Y2Q5 125 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 220.3 ms