RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 K7EP13 123 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 PPP1R17O96001 155 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 CA1P00915 261 aaPredicted RBP3.86□□□□□ -1.79
SHMT1-211ENST00000618902 PRB4P10163 310 aaPredicted RBP3.86□□□□□ -1.79
SHMT1-211ENST00000618902 PTTG1IPP53801 180 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 TCTAP57738 103 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 HIST1H1AQ02539 215 aaPredicted RBP3.86□□□□□ -1.79
SHMT1-211ENST00000618902 GDF5OSQ5U4N7 250 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 IGFL4Q6B9Z1 124 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 GOLT1AQ6ZVE7 132 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 SMIM15Q7Z3B0 74 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 APRG1Q8IVJ8 170 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 C20orf173Q96LM9 149 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 C1QTNF4Q9BXJ3 329 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 MAP6D1Q9H9H5 199 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 EDA2RQ9HAV5 297 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 COX11Q9Y6N1 276 aa3.86□□□□□ -1.79
SHMT1-211ENST00000618902 IGHV1-24A0A0C4DH33 117 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 A6NDN8 102 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 KNCNA6PVL3 124 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 H3BTX0 84 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 GIG44P09565 113 aaPredicted RBP3.85□□□□□ -1.79
SHMT1-211ENST00000618902 ZNF688P0C7X2 276 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 COX8AP10176 69 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 HLA-DMBP28068 263 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 ID1P41134 155 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 DEFB131AP59861 70 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 RPL11P62913 178 aaKnown RBP3.85□□□□□ -1.79
SHMT1-211ENST00000618902 CACNG7P62955 275 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 GNG5P63218 68 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 RNF183Q96D59 192 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 CSTL1Q9H114 145 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 RYR2Q92736 4967 aa3.85□□□□□ -1.79
SHMT1-211ENST00000618902 IGHV4-4A0A075B6R2 117 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 TEX48A0A1B0GUV7 120 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 SPRY2O43597 315 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 ATP5LO75964 103 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 HBDP02042 147 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 HLA-DRB4P13762 266 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 RPL35AP18077 110 aaKnown RBP3.84□□□□□ -1.79
SHMT1-211ENST00000618902 SMCPP49901 116 aaPredicted RBP3.84□□□□□ -1.79
SHMT1-211ENST00000618902 KIR3DS1Q14943 382 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 GTF2H5Q6ZYL4 71 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 STHQ8IWL8 128 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 EXOC3-AS1Q8N2X6 119 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 RNF182Q8N6D2 247 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 FER1L6-AS1Q8NA97 138 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 ZC2HC1AQ96GY0 325 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 URB1-AS1Q96HZ7 61 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 LINC00477Q96M19 166 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 PRELID3AQ96N28 172 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 SSBP4Q9BWG4 385 aaPredicted RBP3.84□□□□□ -1.79
SHMT1-211ENST00000618902 C11orf68Q9H3H3 251 aaKnown RBP3.84□□□□□ -1.79
SHMT1-211ENST00000618902 RETNQ9HD89 108 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 SCRT2Q9NQ03 307 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 HLA-DRB4X5D2U9 266 aa3.84□□□□□ -1.79
SHMT1-211ENST00000618902 C7orf71A4D174 169 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 SMIM9A6NGZ8 99 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 PRAC2D3DTV9 90 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 F6UB75 175 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 H3BRM9 83 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 NUDT3O95989 172 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 GHRHP01286 108 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 IGLC6P0CF74 106 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 MED14OSP0DP75 135 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 MIFP14174 115 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 FCER1GP30273 86 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 CKS2P33552 79 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 CRIP1P50238 77 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 BATFQ16520 125 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 TAL2Q16559 108 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 CASC10Q5T4H9 136 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 LYZL1Q6UWQ5 148 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 C9orf47Q6ZRZ4 202 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 TRPT1Q86TN4 253 aaKnown RBP3.83□□□□□ -1.8
SHMT1-211ENST00000618902 AMN1Q8IY45 258 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 STPG4Q8N801 248 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 AP1S3Q96PC3 154 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 OVOL2Q9BRP0 275 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 MAP1LC3AQ9H492 121 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 HIGD1BQ9P298 99 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 RPH3ALQ9UNE2 315 aa3.83□□□□□ -1.8
SHMT1-211ENST00000618902 ALMS1Q8TCU4 4167 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 NUPR2A6NF83 97 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 H3BMM0 161 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 SH2D1AO60880 128 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 ARMS2P0C7Q2 107 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 TWIST1Q15672 202 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 VAMP3Q15836 100 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 TMEM97Q5BJF2 176 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 BVES-AS1Q5T3Y7 98 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 TMEM78Q5T7P6 136 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 FOXI2Q6ZQN5 318 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 ERASQ7Z444 233 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 OR4C5Q8NGB2 326 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 IFI27L1Q96BM0 104 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 MRAP2Q96G30 205 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 C20orf78Q9BR46 151 aa3.82□□□□□ -1.8
SHMT1-211ENST00000618902 KLK5Q9Y337 293 aaPredicted RBP3.82□□□□□ -1.8
SHMT1-211ENST00000618902 DNAH6Q9C0G6 4158 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms