RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 GAFA1Q96PS6 74 aa11.84□□□□□ -0.51
COL5A1-208ENST00000618395 COX7A2LO14548 114 aa11.84□□□□□ -0.51
COL5A1-208ENST00000618395 ZNF581Q9P0T4 197 aa11.84□□□□□ -0.51
COL5A1-208ENST00000618395 TMEM178BH3BS89 294 aa11.84□□□□□ -0.51
COL5A1-208ENST00000618395 FAM19A3Q7Z5A8 133 aa11.83□□□□□ -0.51
COL5A1-208ENST00000618395 Q9HAA7 133 aa11.83□□□□□ -0.51
COL5A1-208ENST00000618395 DEFB131AP59861 70 aa11.83□□□□□ -0.52
COL5A1-208ENST00000618395 MIAQ16674 131 aa11.83□□□□□ -0.52
COL5A1-208ENST00000618395 METRNQ9UJH8 293 aa11.83□□□□□ -0.52
COL5A1-208ENST00000618395 LENEPQ9Y5L5 61 aa11.83□□□□□ -0.52
COL5A1-208ENST00000618395 VPREB3Q9UKI3 123 aa11.83□□□□□ -0.52
COL5A1-208ENST00000618395 FAM208BQ5VWN6 2430 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 C9orf47Q6ZRZ4 202 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 CRIPAKQ8N1N5 446 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 RNF144BQ7Z419 303 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 P0DMU3 169 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 FAM231AP0DMU4 169 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 FAM231CP0DMU5 169 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 PRO0628Q9UI54 55 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 IGKV1-6A0A0C4DH72 117 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 WDR86Q86TI4 376 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 TTTY13Q9BZ97 58 aa11.82□□□□□ -0.52
COL5A1-208ENST00000618395 XCL2Q9UBD3 114 aa11.81□□□□□ -0.52
COL5A1-208ENST00000618395 C11orf44Q8N8P7 122 aa11.81□□□□□ -0.52
COL5A1-208ENST00000618395 DIRC1Q969H9 104 aa11.81□□□□□ -0.52
COL5A1-208ENST00000618395 GATA1P15976 413 aaPredicted RBP11.81□□□□□ -0.52
COL5A1-208ENST00000618395 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.81□□□□□ -0.52
COL5A1-208ENST00000618395 LHBP01229 141 aa11.8□□□□□ -0.52
COL5A1-208ENST00000618395 C2CD3Q4AC94 2353 aa11.8□□□□□ -0.52
COL5A1-208ENST00000618395 RNASE6Q93091 150 aaKnown RBP11.8□□□□□ -0.52
COL5A1-208ENST00000618395 ZNF503Q96F45 646 aa11.8□□□□□ -0.52
COL5A1-208ENST00000618395 SEM1Q6ZVN7 128 aa11.8□□□□□ -0.52
COL5A1-208ENST00000618395 OVOL3O00110 214 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 C5orf38Q86SI9 138 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 NRGNQ92686 78 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 IGKV1D-17A0A075B6S4 117 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 IGHV1-58A0A0C4DH39 117 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 NSUN5P1Q3KNT7 163 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 C9orf106Q8NAJ2 232 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 MBD3L2Q8NHZ7 208 aaPredicted RBP11.79□□□□□ -0.52
COL5A1-208ENST00000618395 TIMM17AQ99595 171 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 C2orf70A6NJV1 201 aa11.79□□□□□ -0.52
COL5A1-208ENST00000618395 TRBV27A0A0K0K1C4 114 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 XGP55808 180 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 ZNF833PQ6ZTB9 187 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 FGF23Q9GZV9 251 aaPredicted RBP11.78□□□□□ -0.52
COL5A1-208ENST00000618395 MYO18BQ8IUG5 2567 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 IGF2BP2-AS1Q96M15 143 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 A0A0J9YXV3 536 aa11.78□□□□□ -0.52
COL5A1-208ENST00000618395 PRR20EP86478 221 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 PRR20CP86479 221 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 PRR20DP86480 221 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 PRR20BP86481 221 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 PRR20AP86496 221 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 ATP1A1-AS1Q5TC04 95 aa11.77□□□□□ -0.53
COL5A1-208ENST00000618395 NDUFA4O00483 81 aa11.76□□□□□ -0.53
COL5A1-208ENST00000618395 DSCR9P59020 149 aa11.76□□□□□ -0.53
COL5A1-208ENST00000618395 GNRH2O43555 120 aa11.76□□□□□ -0.53
COL5A1-208ENST00000618395 SP7Q8TDD2 431 aaPredicted RBP11.76□□□□□ -0.53
COL5A1-208ENST00000618395 IGHV1-69P01742 117 aa11.76□□□□□ -0.53
COL5A1-208ENST00000618395 Q6ZS92 163 aa11.75□□□□□ -0.53
COL5A1-208ENST00000618395 CGB7P0DN87 165 aa11.75□□□□□ -0.53
COL5A1-208ENST00000618395 H3BUX3 64 aa11.75□□□□□ -0.53
COL5A1-208ENST00000618395 FAM110DQ8TAY7 271 aaPredicted RBP11.75□□□□□ -0.53
COL5A1-208ENST00000618395 CGB3P0DN86 165 aa11.75□□□□□ -0.53
COL5A1-208ENST00000618395 RPL39P62891 51 aaKnown RBP11.75□□□□□ -0.53
COL5A1-208ENST00000618395 C5orf63A6NC05 138 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 RNF138Q8WVD3 245 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 WT1-ASQ06250 92 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 MIR7-3HGQ8N6C7 128 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 LYNX1G3V0Z9 82 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 LYNX1P0DP58 116 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 GPR179Q6PRD1 2367 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 TRBV30A0A0K0K1B3 111 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 CLPSP04118 112 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 LMO1P25800 156 aa11.74□□□□□ -0.53
COL5A1-208ENST00000618395 NCR3O14931 201 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 MIFP14174 115 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 GGNQ86UU5 652 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 Q6ZR03 302 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 MRPS12O15235 138 aaKnown RBP11.73□□□□□ -0.53
COL5A1-208ENST00000618395 CTRLP40313 264 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 IGHV3-30-3P0DP02 117 aa11.73□□□□□ -0.53
COL5A1-208ENST00000618395 HOXB4P17483 251 aaPredicted RBP11.72□□□□□ -0.53
COL5A1-208ENST00000618395 CD59P13987 128 aa11.72□□□□□ -0.53
COL5A1-208ENST00000618395 ZNF672Q499Z4 452 aaPredicted RBP11.72□□□□□ -0.53
COL5A1-208ENST00000618395 LINC00526Q96FQ7 95 aa11.72□□□□□ -0.53
COL5A1-208ENST00000618395 TRIAP1O43715 76 aa11.72□□□□□ -0.53
COL5A1-208ENST00000618395 CFAP126Q5VTH2 177 aa11.71□□□□□ -0.53
COL5A1-208ENST00000618395 ATP6V0E1O15342 81 aa11.71□□□□□ -0.53
COL5A1-208ENST00000618395 PTPRSQ13332 1948 aa11.71□□□□□ -0.53
COL5A1-208ENST00000618395 CAMK2N2Q96S95 79 aa11.71□□□□□ -0.53
COL5A1-208ENST00000618395 IGLV3-12A0A075B6K2 115 aa11.71□□□□□ -0.54
COL5A1-208ENST00000618395 SAA4P35542 130 aa11.71□□□□□ -0.54
COL5A1-208ENST00000618395 SHISA2Q6UWI4 295 aa11.71□□□□□ -0.54
COL5A1-208ENST00000618395 C17orf77Q96MU5 243 aa11.7□□□□□ -0.54
COL5A1-208ENST00000618395 TRAV7A0A075B6U4 112 aa11.7□□□□□ -0.54
COL5A1-208ENST00000618395 ZNF883P0CG24 379 aa11.7□□□□□ -0.54
COL5A1-208ENST00000618395 SPRR3Q9UBC9 169 aa11.7□□□□□ -0.54
COL5A1-208ENST00000618395 COL5A1P20908 1838 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms