RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 A0A087WWL8 130 aa11.88□□□□□ -0.51
SHKBP1-212ENST00000596163 F2Z2F3 143 aa11.88□□□□□ -0.51
SHKBP1-212ENST00000596163 CRYGDP07320 174 aa11.88□□□□□ -0.51
SHKBP1-212ENST00000596163 CACNG7P62955 275 aa11.87□□□□□ -0.51
SHKBP1-212ENST00000596163 Q6ZSN1 163 aa11.87□□□□□ -0.51
SHKBP1-212ENST00000596163 ATP6V0E2Q8NHE4 81 aa11.87□□□□□ -0.51
SHKBP1-212ENST00000596163 SMIM7Q9BQ49 75 aa11.87□□□□□ -0.51
SHKBP1-212ENST00000596163 TPPP3Q9BW30 176 aa11.87□□□□□ -0.51
SHKBP1-212ENST00000596163 TRAV9-2A0A087WT02 112 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 SRP19P09132 144 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 IGLC6P0CF74 106 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 SMIM17P0DL12 118 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 GZMBP10144 247 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 BTF3P20290 206 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 PEA15Q15121 130 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 SMDT1Q9H4I9 107 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 RPP21Q9H633 154 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 NACAE9PAV3 2078 aa11.86□□□□□ -0.51
SHKBP1-212ENST00000596163 EPPK1P58107 5090 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 MUC21A0A0G2JKD1 596 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 MUC21A0A140T8X8 626 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 ZNF727A8MUV8 499 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 K7EN84 100 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 K7EP13 123 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 RAB4BP61018 213 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 FAM74A3Q4VXF1 159 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 C6orf223Q8N319 242 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 AP1S3Q96PC3 154 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 RNASE7Q9H1E1 156 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 GTSF1LQ9H1H1 148 aa11.85□□□□□ -0.51
SHKBP1-212ENST00000596163 TRAV8-6A0A0B4J262 113 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GAGE12JA6NER3 117 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 RTL8CO15255 209 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GATCO43716 136 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 RAB14P61106 215 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 SSTP61278 116 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GAGE1Q13065 139 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GAGE4Q13068 117 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GAGE5Q13069 117 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 GAGE13Q4V321 117 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 WDR73Q6P4I2 378 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 FAM231DQ6ZW35 169 aa11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 C14orf178Q8N769 122 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-212ENST00000596163 DNAH10Q8IVF4 4471 aa11.83□□□□□ -0.52
SHKBP1-212ENST00000596163 PRSS29PA6NIE9 313 aa11.83□□□□□ -0.52
SHKBP1-212ENST00000596163 EVI2AP22794 236 aa11.83□□□□□ -0.52
SHKBP1-212ENST00000596163 ERVFC1-1P60608 527 aa11.83□□□□□ -0.52
SHKBP1-212ENST00000596163 ZNF56Q15929 161 aa11.83□□□□□ -0.52
SHKBP1-212ENST00000596163 F5H697 171 aa11.82□□□□□ -0.52
SHKBP1-212ENST00000596163 RPL36AP83881 106 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-212ENST00000596163 LELP1Q5T871 98 aa11.82□□□□□ -0.52
SHKBP1-212ENST00000596163 LYZL1Q6UWQ5 148 aa11.82□□□□□ -0.52
SHKBP1-212ENST00000596163 RPL36ALQ969Q0 106 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-212ENST00000596163 A0A087WWC5 75 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 A8MWL6 223 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 TRGC1P0CF51 173 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 TMEM241Q24JQ0 296 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 OR10J3Q5JRS4 329 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 LINC01551Q86U37 167 aa11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.81□□□□□ -0.52
SHKBP1-212ENST00000596163 DNAH10OSP0CZ25 163 aa11.8□□□□□ -0.52
SHKBP1-212ENST00000596163 LINC00694P0DN24 101 aa11.8□□□□□ -0.52
SHKBP1-212ENST00000596163 CT83Q5H943 113 aa11.8□□□□□ -0.52
SHKBP1-212ENST00000596163 WFDC10BQ8IUB3 73 aa11.8□□□□□ -0.52
SHKBP1-212ENST00000596163 TRBV7-3A0A075B6L6 115 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 IGHV3-38A0A0C4DH36 116 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 NTF3P20783 257 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 CTRLP40313 264 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 C10orf126Q8N4M7 172 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 OSTCQ9NRP0 149 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 KIF25-AS1Q9Y6Z4 181 aa11.79□□□□□ -0.52
SHKBP1-212ENST00000596163 H7C1H1 209 aa11.78□□□□□ -0.52
SHKBP1-212ENST00000596163 TWIST1Q15672 202 aa11.78□□□□□ -0.52
SHKBP1-212ENST00000596163 C15orf54Q8N8G6 183 aa11.78□□□□□ -0.52
SHKBP1-212ENST00000596163 OR10G8Q8NGN5 311 aa11.78□□□□□ -0.52
SHKBP1-212ENST00000596163 KRTAP1-5Q9BYS1 174 aa11.78□□□□□ -0.52
SHKBP1-212ENST00000596163 SMIM15Q7Z3B0 74 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 NFE4Q86UQ8 179 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 BORCS7Q96B45 105 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 CNFNQ9BYD5 112 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 DPH3P1Q9H4G8 78 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 MSRB1Q9NZV6 116 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 Q9UF83 564 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 NAT8Q9UHE5 227 aa11.77□□□□□ -0.53
SHKBP1-212ENST00000596163 MGPP08493 103 aa11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 FOXA3P55318 350 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 UBE2D3P61077 147 aa11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 UBE2D2P62837 147 aa11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 SRSF3P84103 164 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 LINC01556Q5JQF7 62 aa11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 GFRA4Q9GZZ7 299 aa11.76□□□□□ -0.53
SHKBP1-212ENST00000596163 FAM231BA6NCW3 169 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 C9JQL5 133 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 LINC00315P59091 139 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 NEXN-AS1Q8NBZ9 246 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 TSKUQ8WUA8 353 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 GTSF1Q8WW33 167 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 DNAJC30Q96LL9 226 aa11.75□□□□□ -0.53
SHKBP1-212ENST00000596163 DNAH2Q9P225 4427 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms