RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SMCPP49901 116 aaPredicted RBP11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 UBE2D3P61077 147 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 UBE2D2P62837 147 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 LCNL1Q6ZST4 164 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 USMG5Q96IX5 58 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 PIMREGQ9BSJ6 248 aa11.16□□□□□ -0.62
SMARCA4-219ENST00000592604 FOXI1Q12951 378 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 ZFP2Q6ZN57 461 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 A0A0J9YY99 117 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 H3BUA1 57 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 APOMO95445 188 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 HERVK_113P61574 105 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 PMVKQ15126 192 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 TMEM141Q96I45 108 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 CEP295Q9C0D2 2601 aa11.15□□□□□ -0.62
SMARCA4-219ENST00000592604 SVEP1Q4LDE5 3571 aa11.15□□□□□ -0.63
SMARCA4-219ENST00000592604 TP53TG1Q9Y2A0 90 aa11.15□□□□□ -0.63
SMARCA4-219ENST00000592604 KLLNB2CW77 178 aa11.14□□□□□ -0.63
SMARCA4-219ENST00000592604 TIMM17AQ99595 171 aa11.14□□□□□ -0.63
SMARCA4-219ENST00000592604 UBTD1Q9HAC8 227 aa11.14□□□□□ -0.63
SMARCA4-219ENST00000592604 ASH1LQ9NR48 2969 aaKnown RBP11.14□□□□□ -0.63
SMARCA4-219ENST00000592604 VCYO14598 125 aa11.14□□□□□ -0.63
SMARCA4-219ENST00000592604 MT-ATP8P03928 68 aa11.13□□□□□ -0.63
SMARCA4-219ENST00000592604 RPL11P62913 178 aaKnown RBP11.13□□□□□ -0.63
SMARCA4-219ENST00000592604 NDUFA11Q86Y39 141 aa11.13□□□□□ -0.63
SMARCA4-219ENST00000592604 LYRM7Q5U5X0 104 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 SUMO4Q6EEV6 95 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 RHPN1-AS1Q9BWJ2 59 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHV1-69P01742 117 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 KIR2DL4Q99706 377 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHG2P01859 326 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 PSMB2P49721 201 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 MUC6Q6W4X9 2439 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 SLC25A29Q8N8R3 303 aa11.12□□□□□ -0.63
SMARCA4-219ENST00000592604 LOC107984156A0A0G2JMH3 177 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 WIPF1O43516 503 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHV3-30P01768 117 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHV3-30-5P0DP03 117 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 FAM159AQ6UWV7 190 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 ARL17AQ8IVW1 177 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 JPT2Q9H910 190 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHV3OR16-10A0A075B7F0 116 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 TRBV6-5A0A0K0K1A5 114 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 TRBV27A0A0K0K1C4 114 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 IGHV3-11P01762 117 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 RPL39P62891 51 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 ZNF876PQ49A33 203 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 NFE4Q86UQ8 179 aa11.11□□□□□ -0.63
SMARCA4-219ENST00000592604 EMP1P54849 157 aa11.1□□□□□ -0.63
SMARCA4-219ENST00000592604 UCNP55089 124 aa11.1□□□□□ -0.63
SMARCA4-219ENST00000592604 TSPEAR-AS2P59090 65 aa11.1□□□□□ -0.63
SMARCA4-219ENST00000592604 IGKV3-7A0A075B6H7 116 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 SDHAF1A6NFY7 115 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 CCDC179H3BU77 68 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 LGALS9O00182 355 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 CFC1BP0CG36 223 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 CFC1P0CG37 223 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 ZNRF2Q8NHG8 242 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 AMELXQ99217 191 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 CDIP1Q9H305 208 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 DAZ1Q9NQZ3 744 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 TRBV20-1A0A075B6N2 111 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 BRD3OSQ6XYD6 125 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 Q6ZS46 218 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 SBSPONQ8IVN8 264 aa11.09□□□□□ -0.63
SMARCA4-219ENST00000592604 SYT8Q8NBV8 401 aa11.08□□□□□ -0.63
SMARCA4-219ENST00000592604 GAGE12JA6NER3 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 GAGE7O76087 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 GAGE12FP0CL80 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 GAGE12GP0CL81 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 GAGE12IP0CL82 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 GAGE4Q13068 117 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 C10orf126Q8N4M7 172 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 A0A087WWL8 130 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 TMEM170BQ5T4T1 132 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 SFTA2Q6UW10 78 aa11.08□□□□□ -0.64
SMARCA4-219ENST00000592604 ABCA2Q9BZC7 2435 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 F5H697 171 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 TCL1BO95988 128 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 IGLV1-40P01703 118 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 A6NDX4 124 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 K7EMT4 169 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 TEN1Q86WV5 123 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 DCANP1Q8TF63 244 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 PPDPFLQ8WWR9 84 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 NRGNQ92686 78 aa11.07□□□□□ -0.64
SMARCA4-219ENST00000592604 J3QQQ9 107 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 NHLRC4P0CG21 123 aaPredicted RBP11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 CARD19Q96LW7 228 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 C9orf85Q96MD7 179 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 SMIM9A6NGZ8 99 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 LY6EQ16553 131 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 DEFB104AQ8WTQ1 72 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 HIVEP3Q5T1R4 2406 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 ZFHX3Q15911 3703 aa11.06□□□□□ -0.64
SMARCA4-219ENST00000592604 SRD5A1P18405 259 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 PRO1854Q9UHT4 67 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 TRAV12-3A0A0B4J271 114 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 XGP55808 180 aa11.05□□□□□ -0.64
SMARCA4-219ENST00000592604 NSUN5P1Q3KNT7 163 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms