RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TRAV8-3A0A0A6YYJ7 113 aa13.93□□□□□ -0.18
VPS53-216ENST00000574029 PAGE4O60829 102 aa13.93□□□□□ -0.18
VPS53-216ENST00000574029 PLA2G1BP04054 148 aaKnown RBP13.93□□□□□ -0.18
VPS53-216ENST00000574029 PIK3CD-AS1Q5SR53 167 aa13.93□□□□□ -0.18
VPS53-216ENST00000574029 PRNTQ86SH4 94 aa13.93□□□□□ -0.18
VPS53-216ENST00000574029 A8MWV9 139 aa13.92□□□□□ -0.18
VPS53-216ENST00000574029 CST9LP1Q5W188 147 aa13.92□□□□□ -0.18
VPS53-216ENST00000574029 TRAV34A0A0B4J273 112 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 IGKV3D-20A0A0C4DH25 116 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 GAGE12JA6NER3 117 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 GAGE1Q13065 139 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 GAGE4Q13068 117 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 GAGE5Q13069 117 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 GAGE13Q4V321 117 aa13.91□□□□□ -0.18
VPS53-216ENST00000574029 DAZ4Q86SG3 579 aaKnown RBP13.91□□□□□ -0.18
VPS53-216ENST00000574029 DAZ3Q9NR90 486 aaKnown RBP13.91□□□□□ -0.18
VPS53-216ENST00000574029 TRBV6-1A0A0K0K1D8 114 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 A0A1B0GV50 99 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 CCL20P78556 96 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 TOR2AQ5JU69 321 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 UFSP1Q6NVU6 142 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 LINC00528Q8N1L1 170 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 Q9UF83 564 aa13.9□□□□□ -0.18
VPS53-216ENST00000574029 KRTAP29-1A8MX34 341 aaPredicted RBP13.89□□□□□ -0.19
VPS53-216ENST00000574029 TEX46H3BTG2 121 aa13.89□□□□□ -0.19
VPS53-216ENST00000574029 LECT2O14960 151 aa13.89□□□□□ -0.19
VPS53-216ENST00000574029 COX8CQ7Z4L0 72 aa13.89□□□□□ -0.19
VPS53-216ENST00000574029 FMC1Q96HJ9 113 aa13.89□□□□□ -0.19
VPS53-216ENST00000574029 ZFP30Q9Y2G7 519 aa13.89□□□□□ -0.19
VPS53-216ENST00000574029 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.88□□□□□ -0.19
VPS53-216ENST00000574029 A0A087WWC5 75 aa13.88□□□□□ -0.19
VPS53-216ENST00000574029 S100A4P26447 101 aaKnown RBP13.88□□□□□ -0.19
VPS53-216ENST00000574029 SAMD10Q9BYL1 202 aa13.88□□□□□ -0.19
VPS53-216ENST00000574029 MANBALQ9NQG1 85 aa13.88□□□□□ -0.19
VPS53-216ENST00000574029 COX11Q9Y6N1 276 aa13.88□□□□□ -0.19
VPS53-216ENST00000574029 S100A9P06702 114 aaKnown RBP13.87□□□□□ -0.19
VPS53-216ENST00000574029 ASIPP42127 132 aa13.87□□□□□ -0.19
VPS53-216ENST00000574029 NKX2-5P52952 324 aaPredicted RBP13.87□□□□□ -0.19
VPS53-216ENST00000574029 Q86TA4 180 aa13.87□□□□□ -0.19
VPS53-216ENST00000574029 BAALCQ8WXS3 180 aa13.87□□□□□ -0.19
VPS53-216ENST00000574029 JPT2Q9H910 190 aa13.87□□□□□ -0.19
VPS53-216ENST00000574029 FABP5P3A8MUU1 101 aa13.86□□□□□ -0.19
VPS53-216ENST00000574029 C14orf178Q8N769 122 aaPredicted RBP13.86□□□□□ -0.19
VPS53-216ENST00000574029 DEFB104AQ8WTQ1 72 aa13.86□□□□□ -0.19
VPS53-216ENST00000574029 IL36BQ9NZH7 164 aa13.86□□□□□ -0.19
VPS53-216ENST00000574029 UBE2G1P62253 170 aa13.85□□□□□ -0.19
VPS53-216ENST00000574029 GNG13Q9P2W3 67 aa13.85□□□□□ -0.19
VPS53-216ENST00000574029 LTAP01374 205 aa13.84□□□□□ -0.19
VPS53-216ENST00000574029 DNLZQ5SXM8 178 aa13.84□□□□□ -0.19
VPS53-216ENST00000574029 DMRTA1Q5VZB9 504 aa13.84□□□□□ -0.19
VPS53-216ENST00000574029 SCXQ7RTU7 201 aa13.84□□□□□ -0.19
VPS53-216ENST00000574029 RMI2Q96E14 147 aa13.84□□□□□ -0.19
VPS53-216ENST00000574029 AKR1C3P42330 323 aa13.83□□□□□ -0.2
VPS53-216ENST00000574029 LINC01620Q4KN68 170 aa13.83□□□□□ -0.2
VPS53-216ENST00000574029 ALKAL2Q6UX46 152 aa13.83□□□□□ -0.2
VPS53-216ENST00000574029 NIT1Q86X76 327 aa13.83□□□□□ -0.2
VPS53-216ENST00000574029 SCO2A0A1W2PP80 73 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 B4DEV8 164 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 H3BVH4 76 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 RHODO00212 210 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 CRIP1P50238 77 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 Q8N976 141 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 URGCP-MRPS24S4R325 110 aa13.82□□□□□ -0.2
VPS53-216ENST00000574029 UBR4Q5T4S7 5183 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 RBFOX3A6NFN3 312 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 BLOC1S1P78537 153 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 SYT8Q8NBV8 401 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 C11orf52Q96A22 123 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 ZC2HC1AQ96GY0 325 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 DNAJC30Q96LL9 226 aa13.81□□□□□ -0.2
VPS53-216ENST00000574029 KRBOX1C9JBD0 128 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 IFNA1P01562 189 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 ARMS2P0C7Q2 107 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 TAGLN2P37802 199 aaKnown RBP13.8□□□□□ -0.2
VPS53-216ENST00000574029 ZNF674Q2M3X9 581 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 LYPD6BQ8NI32 183 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 MLST8Q9BVC4 326 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 KLK12Q9UKR0 248 aa13.8□□□□□ -0.2
VPS53-216ENST00000574029 IGKV2D-24A0A075B6R9 120 aa13.79□□□□□ -0.2
VPS53-216ENST00000574029 KRTAP10-4P60372 401 aaPredicted RBP13.79□□□□□ -0.2
VPS53-216ENST00000574029 MEF2BQ02080 365 aaPredicted RBP13.79□□□□□ -0.2
VPS53-216ENST00000574029 FAM162BQ5T6X4 162 aa13.79□□□□□ -0.2
VPS53-216ENST00000574029 CHAC1Q9BUX1 264 aa13.79□□□□□ -0.2
VPS53-216ENST00000574029 PDE6DO43924 150 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 BCL2P10415 239 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 FAM74A4Q5TZK3 123 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 SFRP2Q96HF1 295 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 CHCHD7Q9BUK0 85 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 VAX2Q9UIW0 290 aa13.78□□□□□ -0.2
VPS53-216ENST00000574029 GRIFINA4D1Z8 144 aa13.77□□□□□ -0.21
VPS53-216ENST00000574029 M0R036 132 aa13.77□□□□□ -0.21
VPS53-216ENST00000574029 ATRAIDQ6UW56 229 aa13.77□□□□□ -0.21
VPS53-216ENST00000574029 BAGE2Q86Y30 109 aa13.77□□□□□ -0.21
VPS53-216ENST00000574029 UBE2WQ96B02 151 aa13.77□□□□□ -0.21
VPS53-216ENST00000574029 A0A087WWL8 130 aa13.76□□□□□ -0.21
VPS53-216ENST00000574029 SH2D1AO60880 128 aa13.76□□□□□ -0.21
VPS53-216ENST00000574029 RPL35P42766 123 aaKnown RBP13.76□□□□□ -0.21
VPS53-216ENST00000574029 ELOBQ15370 118 aa13.76□□□□□ -0.21
VPS53-216ENST00000574029 A0A087WX48 190 aa13.75□□□□□ -0.21
VPS53-216ENST00000574029 TRBV10-1A0A0K0K1A3 114 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms