RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ARMS2P0C7Q2 107 aa11.39□□□□□ -0.59
CLK3-221ENST00000568139 HNRNPA3P51991 378 aaKnown RBP11.39□□□□□ -0.59
CLK3-221ENST00000568139 DAZAP1Q96EP5 407 aaKnown RBP11.39□□□□□ -0.59
CLK3-221ENST00000568139 PSMG3Q9BT73 122 aaPredicted RBP11.39□□□□□ -0.59
CLK3-221ENST00000568139 A0A1W2PRE2 83 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 MBP02144 154 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 FAM74A4Q5TZK3 123 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 KCNIP4Q6PIL6 250 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 HSD17B11Q8NBQ5 300 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 SFRP2Q96HF1 295 aa11.38□□□□□ -0.59
CLK3-221ENST00000568139 TRBV10-1A0A0K0K1A3 114 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 KRBOX1C9JBD0 128 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 ATP6V0CP27449 155 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 CRIP1P50238 77 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 UBE2D3P61077 147 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 UBE2D2P62837 147 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 SERF2P84101 59 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 ENHOQ6UWT2 76 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 OR11H4Q8NGC9 324 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 C1orf43Q9BWL3 253 aa11.37□□□□□ -0.59
CLK3-221ENST00000568139 A0A087WWL8 130 aa11.36□□□□□ -0.59
CLK3-221ENST00000568139 RPL36AP83881 106 aaKnown RBP11.36□□□□□ -0.59
CLK3-221ENST00000568139 RPL36ALQ969Q0 106 aaKnown RBP11.36□□□□□ -0.59
CLK3-221ENST00000568139 TRBV7-3A0A075B6L6 115 aa11.35□□□□□ -0.59
CLK3-221ENST00000568139 COX8CQ7Z4L0 72 aa11.35□□□□□ -0.59
CLK3-221ENST00000568139 Q86TA4 180 aa11.35□□□□□ -0.59
CLK3-221ENST00000568139 ACTR3CQ9C0K3 210 aaPredicted RBP11.35□□□□□ -0.59
CLK3-221ENST00000568139 TNFSF18Q9UNG2 199 aa11.35□□□□□ -0.59
CLK3-221ENST00000568139 GRIFINA4D1Z8 144 aa11.34□□□□□ -0.59
CLK3-221ENST00000568139 TMEM262E9PQX1 116 aa11.34□□□□□ -0.59
CLK3-221ENST00000568139 M0R036 132 aa11.34□□□□□ -0.59
CLK3-221ENST00000568139 ZC2HC1AQ96GY0 325 aa11.34□□□□□ -0.59
CLK3-221ENST00000568139 PHLDA3Q9Y5J5 127 aa11.34□□□□□ -0.59
CLK3-221ENST00000568139 TRBV6-8A0A0A6YYG3 113 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 USP17L23D6RBM5 183 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 PEX7O00628 323 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 SH2D1AO60880 128 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 IFNA7P01567 189 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 MT1HL1P0DM35 61 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 DGAT2L7PQ6IED9 249 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 C15orf54Q8N8G6 183 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 C9orf163Q8N9P6 203 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 OR10G8Q8NGN5 311 aa11.33□□□□□ -0.6
CLK3-221ENST00000568139 M0R381 172 aa11.32□□□□□ -0.6
CLK3-221ENST00000568139 CRPP02741 224 aa11.32□□□□□ -0.6
CLK3-221ENST00000568139 PRSS1P07477 247 aa11.32□□□□□ -0.6
CLK3-221ENST00000568139 TPT1P13693 172 aaKnown RBP11.32□□□□□ -0.6
CLK3-221ENST00000568139 AQP10Q96PS8 301 aa11.32□□□□□ -0.6
CLK3-221ENST00000568139 ZFP30Q9Y2G7 519 aa11.32□□□□□ -0.6
CLK3-221ENST00000568139 MPV17L2Q567V2 206 aa11.31□□□□□ -0.6
CLK3-221ENST00000568139 FAM162BQ5T6X4 162 aa11.31□□□□□ -0.6
CLK3-221ENST00000568139 ZFP82Q8N141 532 aa11.31□□□□□ -0.6
CLK3-221ENST00000568139 HIST1H2BAQ96A08 127 aa11.31□□□□□ -0.6
CLK3-221ENST00000568139 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.31□□□□□ -0.6
CLK3-221ENST00000568139 ANGP03950 147 aaKnown RBP11.3□□□□□ -0.6
CLK3-221ENST00000568139 ZNF726P1Q15940 193 aa11.3□□□□□ -0.6
CLK3-221ENST00000568139 ZNF674Q2M3X9 581 aa11.3□□□□□ -0.6
CLK3-221ENST00000568139 LINC01559Q495D7 138 aa11.3□□□□□ -0.6
CLK3-221ENST00000568139 NKX6-2Q9C056 277 aaPredicted RBP11.3□□□□□ -0.6
CLK3-221ENST00000568139 FAM74A7A6NL05 159 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 PANO1I0J062 215 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 HLA-DQA1P01909 254 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 UBE2G2P60604 165 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 MIAQ16674 131 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 Q6ZRU5 148 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 NEXN-AS1Q8NBZ9 246 aa11.29□□□□□ -0.6
CLK3-221ENST00000568139 CTXND1A0A1B0GTU2 59 aa11.28□□□□□ -0.6
CLK3-221ENST00000568139 RAB4BP61018 213 aa11.28□□□□□ -0.6
CLK3-221ENST00000568139 RPL19P84098 196 aaKnown RBP11.28□□□□□ -0.6
CLK3-221ENST00000568139 PRR27Q6MZM9 219 aa11.28□□□□□ -0.6
CLK3-221ENST00000568139 SDIM1Q6ZPB5 146 aa11.28□□□□□ -0.6
CLK3-221ENST00000568139 TMSB15BA0A087X1C1 80 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 PTTG1O95997 202 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 DEFA1P59665 94 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 DEFA3P59666 94 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 PKIAP61925 76 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 KRTAP26-1Q6PEX3 210 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 FMC1Q96HJ9 113 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 PRR34Q9NV39 138 aa11.27□□□□□ -0.61
CLK3-221ENST00000568139 TRBV6-1A0A0K0K1D8 114 aa11.26□□□□□ -0.61
CLK3-221ENST00000568139 CHCHD5Q9BSY4 110 aa11.26□□□□□ -0.61
CLK3-221ENST00000568139 A0A0D9SG52 128 aa11.25□□□□□ -0.61
CLK3-221ENST00000568139 LTAP01374 205 aa11.25□□□□□ -0.61
CLK3-221ENST00000568139 CIRBPQ14011 172 aaKnown RBP11.25□□□□□ -0.61
CLK3-221ENST00000568139 NTM-AS1Q6ZSK4 140 aa11.25□□□□□ -0.61
CLK3-221ENST00000568139 UBE2G1P62253 170 aa11.24□□□□□ -0.61
CLK3-221ENST00000568139 ZNF56Q15929 161 aa11.24□□□□□ -0.61
CLK3-221ENST00000568139 RPL7L1Q6DKI1 246 aaKnown RBP11.24□□□□□ -0.61
CLK3-221ENST00000568139 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.24□□□□□ -0.61
CLK3-221ENST00000568139 ALG5Q9Y673 324 aa11.24□□□□□ -0.61
CLK3-221ENST00000568139 RBX1P62877 108 aa11.23□□□□□ -0.61
CLK3-221ENST00000568139 TMEM97Q5BJF2 176 aa11.23□□□□□ -0.61
CLK3-221ENST00000568139 CLRN3Q8NCR9 226 aa11.23□□□□□ -0.61
CLK3-221ENST00000568139 VAX2Q9UIW0 290 aa11.23□□□□□ -0.61
CLK3-221ENST00000568139 Q5BKY6 102 aa11.22□□□□□ -0.61
CLK3-221ENST00000568139 LINC00269Q8N2A0 174 aa11.22□□□□□ -0.61
CLK3-221ENST00000568139 OR10AG1Q8NH19 301 aa11.22□□□□□ -0.61
CLK3-221ENST00000568139 BORCS7-ASMTA0A0B4J1R7 106 aa11.21□□□□□ -0.61
CLK3-221ENST00000568139 CXCL1P09341 107 aa11.21□□□□□ -0.61
CLK3-221ENST00000568139 FHITP49789 147 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 195.4 ms