RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF726P1Q15940 193 aa11.05□□□□□ -0.64
CLN3-211ENST00000564091 Q8N976 141 aa11.05□□□□□ -0.64
CLN3-211ENST00000564091 UBE2WQ96B02 151 aa11.05□□□□□ -0.64
CLN3-211ENST00000564091 RMI2Q96E14 147 aa11.05□□□□□ -0.64
CLN3-211ENST00000564091 KRBOX1C9JBD0 128 aa11.04□□□□□ -0.64
CLN3-211ENST00000564091 PEX7O00628 323 aa11.04□□□□□ -0.64
CLN3-211ENST00000564091 Q86TA4 180 aa11.04□□□□□ -0.64
CLN3-211ENST00000564091 SYT8Q8NBV8 401 aa11.04□□□□□ -0.64
CLN3-211ENST00000564091 ZC2HC1AQ96GY0 325 aa11.04□□□□□ -0.64
CLN3-211ENST00000564091 RHODO00212 210 aa11.03□□□□□ -0.64
CLN3-211ENST00000564091 SH2D1AO60880 128 aa11.03□□□□□ -0.64
CLN3-211ENST00000564091 RPL7L1Q6DKI1 246 aaKnown RBP11.03□□□□□ -0.64
CLN3-211ENST00000564091 OR11H4Q8NGC9 324 aa11.03□□□□□ -0.64
CLN3-211ENST00000564091 CHAC1Q9BUX1 264 aa11.03□□□□□ -0.64
CLN3-211ENST00000564091 CIRBP-AS1Q8TBR5 109 aa11.02□□□□□ -0.65
CLN3-211ENST00000564091 A0A087WX48 190 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 TMSB15BA0A087X1C1 80 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 FAM74A7A6NL05 159 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 M0R381 172 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 SEC11BP0C7V7 166 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 KRTAP10-4P60372 401 aaPredicted RBP11.01□□□□□ -0.65
CLN3-211ENST00000564091 DNLZQ5SXM8 178 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 SFRP2Q96HF1 295 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 PHLDA3Q9Y5J5 127 aa11.01□□□□□ -0.65
CLN3-211ENST00000564091 CTXND1A0A1B0GTU2 59 aa11□□□□□ -0.65
CLN3-211ENST00000564091 HIST1H2BAQ96A08 127 aa11□□□□□ -0.65
CLN3-211ENST00000564091 MED28Q9H204 178 aa11□□□□□ -0.65
CLN3-211ENST00000564091 TPT1P13693 172 aaKnown RBP10.99□□□□□ -0.65
CLN3-211ENST00000564091 FAM162BQ5T6X4 162 aa10.99□□□□□ -0.65
CLN3-211ENST00000564091 COX8CQ7Z4L0 72 aa10.99□□□□□ -0.65
CLN3-211ENST00000564091 ZFP30Q9Y2G7 519 aa10.99□□□□□ -0.65
CLN3-211ENST00000564091 BORCS7-ASMTA0A0B4J1R7 106 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 TMEM262E9PQX1 116 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 UBE2D3P61077 147 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 UBE2D2P62837 147 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 RPL36AP83881 106 aaKnown RBP10.98□□□□□ -0.65
CLN3-211ENST00000564091 ELOBQ15370 118 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 KCNIP4Q6PIL6 250 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 ATRAIDQ6UW56 229 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 INO80EQ8NBZ0 244 aaPredicted RBP10.98□□□□□ -0.65
CLN3-211ENST00000564091 RPL36ALQ969Q0 106 aaKnown RBP10.98□□□□□ -0.65
CLN3-211ENST00000564091 CHCHD7Q9BUK0 85 aa10.98□□□□□ -0.65
CLN3-211ENST00000564091 TRBV10-1A0A0K0K1A3 114 aa10.97□□□□□ -0.65
CLN3-211ENST00000564091 ZNF674Q2M3X9 581 aa10.97□□□□□ -0.65
CLN3-211ENST00000564091 NKX6-2Q9C056 277 aaPredicted RBP10.97□□□□□ -0.65
CLN3-211ENST00000564091 PKHD1L1Q86WI1 4243 aa10.97□□□□□ -0.65
CLN3-211ENST00000564091 TRBV7-3A0A075B6L6 115 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 FXYD6-FXYD2A0A087WZ82 144 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 UBE2G1P62253 170 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 LINC01559Q495D7 138 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 AKR1C8PQ5T2L2 129 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 ENHOQ6UWT2 76 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 ZFP82Q8N141 532 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 FMC1Q96HJ9 113 aa10.96□□□□□ -0.65
CLN3-211ENST00000564091 GIPP09681 153 aaPredicted RBP10.95□□□□□ -0.66
CLN3-211ENST00000564091 Q0VG73 95 aa10.95□□□□□ -0.66
CLN3-211ENST00000564091 SERTAD4-AS1Q5TG53 156 aa10.95□□□□□ -0.66
CLN3-211ENST00000564091 C15orf54Q8N8G6 183 aa10.95□□□□□ -0.66
CLN3-211ENST00000564091 C1orf43Q9BWL3 253 aa10.95□□□□□ -0.66
CLN3-211ENST00000564091 TRBV6-8A0A0A6YYG3 113 aa10.94□□□□□ -0.66
CLN3-211ENST00000564091 MAP1LC3B2A6NCE7 125 aa10.94□□□□□ -0.66
CLN3-211ENST00000564091 LTAP01374 205 aa10.94□□□□□ -0.66
CLN3-211ENST00000564091 IGLV2-8P01709 118 aa10.94□□□□□ -0.66
CLN3-211ENST00000564091 MAP1LC3BQ9GZQ8 125 aa10.94□□□□□ -0.66
CLN3-211ENST00000564091 OXTP01178 125 aa10.93□□□□□ -0.66
CLN3-211ENST00000564091 MPV17L2Q567V2 206 aa10.93□□□□□ -0.66
CLN3-211ENST00000564091 CST9LP1Q5W188 147 aa10.93□□□□□ -0.66
CLN3-211ENST00000564091 NEXN-AS1Q8NBZ9 246 aa10.93□□□□□ -0.66
CLN3-211ENST00000564091 OR10G8Q8NGN5 311 aa10.93□□□□□ -0.66
CLN3-211ENST00000564091 TRBV6-1A0A0K0K1D8 114 aa10.92□□□□□ -0.66
CLN3-211ENST00000564091 CRPP02741 224 aa10.92□□□□□ -0.66
CLN3-211ENST00000564091 RPL19P84098 196 aaKnown RBP10.92□□□□□ -0.66
CLN3-211ENST00000564091 C14orf177Q52M58 125 aa10.92□□□□□ -0.66
CLN3-211ENST00000564091 OR10AG1Q8NH19 301 aa10.92□□□□□ -0.66
CLN3-211ENST00000564091 MUC21A0A0G2JKD1 596 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 MUC21A0A140T8X8 626 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 USP17L23D6RBM5 183 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 PTTG1O95997 202 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 ANGP03950 147 aaKnown RBP10.91□□□□□ -0.66
CLN3-211ENST00000564091 AKR1C3P42330 323 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 RAB4BP61018 213 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 ZNF56Q15929 161 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 CHCHD5Q9BSY4 110 aa10.91□□□□□ -0.66
CLN3-211ENST00000564091 HLA-DQA1P01909 254 aa10.9□□□□□ -0.66
CLN3-211ENST00000564091 FHITP49789 147 aa10.9□□□□□ -0.66
CLN3-211ENST00000564091 PRR27Q6MZM9 219 aa10.9□□□□□ -0.66
CLN3-211ENST00000564091 CYTL1Q9NRR1 136 aa10.9□□□□□ -0.66
CLN3-211ENST00000564091 PAGE4O60829 102 aa10.89□□□□□ -0.67
CLN3-211ENST00000564091 PRSS1P07477 247 aa10.89□□□□□ -0.67
CLN3-211ENST00000564091 HNRNPA3P51991 378 aaKnown RBP10.89□□□□□ -0.67
CLN3-211ENST00000564091 SSTP61278 116 aa10.89□□□□□ -0.67
CLN3-211ENST00000564091 RPL37AP61513 92 aaKnown RBP10.89□□□□□ -0.67
CLN3-211ENST00000564091 STOML3Q8TAV4 291 aa10.89□□□□□ -0.67
CLN3-211ENST00000564091 TCEAL7Q9BRU2 100 aa10.89□□□□□ -0.67
CLN3-211ENST00000564091 G3V3Q6 166 aa10.88□□□□□ -0.67
CLN3-211ENST00000564091 NTM-AS1Q6ZSK4 140 aa10.88□□□□□ -0.67
CLN3-211ENST00000564091 ZNF471Q9BX82 626 aaPredicted RBP10.88□□□□□ -0.67
CLN3-211ENST00000564091 F5H697 171 aa10.87□□□□□ -0.67
CLN3-211ENST00000564091 MIAQ16674 131 aa10.87□□□□□ -0.67
CLN3-211ENST00000564091 CLPSL2Q6UWE3 100 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms