RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 TRGV11A0A075B6L2 103 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 ZNF705AQ6ZN79 300 aaPredicted RBP13.16□□□□□ -0.3
COMMD4-208ENST00000563220 SMIM15Q7Z3B0 74 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 ORMDL3Q8N138 153 aa13.16□□□□□ -0.3
COMMD4-208ENST00000563220 MUC4Q99102 2169 aa13.15□□□□□ -0.3
COMMD4-208ENST00000563220 NCR2O95944 276 aa13.15□□□□□ -0.3
COMMD4-208ENST00000563220 CKS2P33552 79 aa13.15□□□□□ -0.3
COMMD4-208ENST00000563220 RNASEKQ6P5S7 137 aaKnown RBP13.15□□□□□ -0.3
COMMD4-208ENST00000563220 C12orf54Q6X4T0 127 aa13.15□□□□□ -0.3
COMMD4-208ENST00000563220 PRELID3AQ96N28 172 aa13.15□□□□□ -0.3
COMMD4-208ENST00000563220 SHISA2Q6UWI4 295 aa13.14□□□□□ -0.31
COMMD4-208ENST00000563220 C14orf178Q8N769 122 aaPredicted RBP13.14□□□□□ -0.31
COMMD4-208ENST00000563220 LINC00467Q9BRT7 94 aa13.14□□□□□ -0.31
COMMD4-208ENST00000563220 GTSCR1Q86UQ5 136 aa13.14□□□□□ -0.31
COMMD4-208ENST00000563220 JPT2Q9H910 190 aa13.14□□□□□ -0.31
COMMD4-208ENST00000563220 C20orf202A1L168 122 aa13.13□□□□□ -0.31
COMMD4-208ENST00000563220 GATA1P15976 413 aaPredicted RBP13.13□□□□□ -0.31
COMMD4-208ENST00000563220 BTF3P20290 206 aaKnown RBP13.13□□□□□ -0.31
COMMD4-208ENST00000563220 SPATA45Q537H7 98 aa13.13□□□□□ -0.31
COMMD4-208ENST00000563220 NPYP01303 97 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 TMEM158Q8WZ71 300 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 KIF25-AS1Q9Y6Z4 181 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 IGHV3OR16-12A0A075B7B8 117 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 TRAV26-2A0A0B4J265 109 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 WIPF1O43516 503 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 PPBPP02775 128 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 DPH3P1Q9H4G8 78 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 UQCR10Q9UDW1 63 aa13.12□□□□□ -0.31
COMMD4-208ENST00000563220 IGLC3P0DOY3 106 aa13.11□□□□□ -0.31
COMMD4-208ENST00000563220 AZU1P20160 251 aa13.11□□□□□ -0.31
COMMD4-208ENST00000563220 AP1S3Q96PC3 154 aa13.11□□□□□ -0.31
COMMD4-208ENST00000563220 TMEM208Q9BTX3 173 aa13.11□□□□□ -0.31
COMMD4-208ENST00000563220 LINC00315P59091 139 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 C11orf72Q8NBR9 251 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 STAB1Q9NY15 2570 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 LOC389332A0A1B0GUA5 103 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 LINC00614P0C842 121 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 MORN3Q6PF18 240 aaPredicted RBP13.1□□□□□ -0.31
COMMD4-208ENST00000563220 SYT8Q8NBV8 401 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 CSNK1G2-AS1Q8NCQ2 148 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 TMEM70Q9BUB7 260 aa13.1□□□□□ -0.31
COMMD4-208ENST00000563220 IFI27P40305 119 aaPredicted RBP13.09□□□□□ -0.31
COMMD4-208ENST00000563220 ZNF876PQ49A33 203 aa13.09□□□□□ -0.31
COMMD4-208ENST00000563220 TRAV9-2A0A087WT02 112 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 A0A087WWL8 130 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 IGHV1-24A0A0C4DH33 117 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 TNFRSF6BO95407 300 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 ZNF415Q09FC8 603 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 POM121L12Q8N7R1 296 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 TCAPO15273 167 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 MGPP08493 103 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 NRACQ8N912 160 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 PRSS3P2Q8NHM4 247 aa13.08□□□□□ -0.32
COMMD4-208ENST00000563220 OXLD1Q5BKU9 147 aa13.07□□□□□ -0.32
COMMD4-208ENST00000563220 MRAP2Q96G30 205 aa13.07□□□□□ -0.32
COMMD4-208ENST00000563220 C1QTNF4Q9BXJ3 329 aa13.07□□□□□ -0.32
COMMD4-208ENST00000563220 LAMTOR2Q9Y2Q5 125 aa13.07□□□□□ -0.32
COMMD4-208ENST00000563220 CRYGDP07320 174 aa13.06□□□□□ -0.32
COMMD4-208ENST00000563220 SMIM17P0DL12 118 aa13.06□□□□□ -0.32
COMMD4-208ENST00000563220 CSTL1Q9H114 145 aa13.06□□□□□ -0.32
COMMD4-208ENST00000563220 M0R2P5 195 aa13.06□□□□□ -0.32
COMMD4-208ENST00000563220 GOLT1BQ9Y3E0 138 aa13.06□□□□□ -0.32
COMMD4-208ENST00000563220 COL6A5A8TX70 2615 aa13.05□□□□□ -0.32
COMMD4-208ENST00000563220 LEPROTL1O95214 131 aa13.05□□□□□ -0.32
COMMD4-208ENST00000563220 RASL10AQ92737 203 aa13.05□□□□□ -0.32
COMMD4-208ENST00000563220 SYS1-DBNDD2H3BUS1 97 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 FAM74A4Q5TZK3 123 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 FA2HQ7L5A8 372 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 RNASE8Q8TDE3 154 aaKnown RBP13.04□□□□□ -0.32
COMMD4-208ENST00000563220 MAP1LC3AQ9H492 121 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 PTH2Q96A98 100 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 SPXQ9BT56 116 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 AP5S1Q9NUS5 200 aa13.04□□□□□ -0.32
COMMD4-208ENST00000563220 MRPS16Q9Y3D3 137 aaKnown RBP13.04□□□□□ -0.32
COMMD4-208ENST00000563220 PET117Q6UWS5 81 aa13.03□□□□□ -0.32
COMMD4-208ENST00000563220 IL17DQ8TAD2 202 aa13.03□□□□□ -0.32
COMMD4-208ENST00000563220 RPL39LQ96EH5 51 aaKnown RBP13.03□□□□□ -0.32
COMMD4-208ENST00000563220 HSPB8Q9UJY1 196 aa13.03□□□□□ -0.32
COMMD4-208ENST00000563220 HNRNPA3P51991 378 aaKnown RBP13.02□□□□□ -0.32
COMMD4-208ENST00000563220 Q6ZN92 141 aa13.02□□□□□ -0.32
COMMD4-208ENST00000563220 SPATA12Q7Z6I5 190 aa13.02□□□□□ -0.32
COMMD4-208ENST00000563220 ATOH7Q8N100 152 aa13.02□□□□□ -0.32
COMMD4-208ENST00000563220 MRPL16Q9NX20 251 aaKnown RBP13.02□□□□□ -0.32
COMMD4-208ENST00000563220 PRSS47A8MTI9 375 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 F5H697 171 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 KRTAP10-11P60412 298 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 PIK3CD-AS1Q5SR53 167 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 COL5A1-AS1Q5SY13 56 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 SUMO4Q6EEV6 95 aa13.02□□□□□ -0.33
COMMD4-208ENST00000563220 TMEM263Q8WUH6 116 aaKnown RBP13.02□□□□□ -0.33
COMMD4-208ENST00000563220 CMYA5Q8N3K9 4069 aa13.01□□□□□ -0.33
COMMD4-208ENST00000563220 IGLV2-18A0A075B6J9 118 aa13.01□□□□□ -0.33
COMMD4-208ENST00000563220 MAP1LC3CQ9BXW4 147 aa13.01□□□□□ -0.33
COMMD4-208ENST00000563220 ST20Q9HBF5 79 aa13.01□□□□□ -0.33
COMMD4-208ENST00000563220 MAJINQ3KP22 176 aa13□□□□□ -0.33
COMMD4-208ENST00000563220 PLAC8L1A1L4L8 177 aa12.99□□□□□ -0.33
COMMD4-208ENST00000563220 UFSP1Q6NVU6 142 aa12.99□□□□□ -0.33
COMMD4-208ENST00000563220 LINC00173Q6ZV60 143 aa12.99□□□□□ -0.33
COMMD4-208ENST00000563220 LINC01546A6NGU7 62 aa12.99□□□□□ -0.33
COMMD4-208ENST00000563220 A8MWV9 139 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms