RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PYGO2Q9BRQ0 406 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 TCEAL7Q9BRU2 100 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 PRADC1Q9BSG0 188 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 Q9HAA7 133 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 ZNF324O75467 553 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-209ENST00000560637 NMUP48645 174 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 GAGE6Q13070 117 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 Q6AWC8 147 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 RPL39LQ96EH5 51 aaKnown RBP4.03□□□□□ -1.76
VPS13C-209ENST00000560637 SCGB3A1Q96QR1 104 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 C16orf95Q9H693 158 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 SIGLEC8Q9NYZ4 499 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 A4D1N5 150 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 IGLV1-51P01701 117 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 IFI27P40305 119 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-209ENST00000560637 C19orf54Q5BKX5 351 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 GTSF1Q8WW33 167 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 TRAV25A0A0B4J276 109 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 COX19Q49B96 90 aa4.03□□□□□ -1.76
VPS13C-209ENST00000560637 SDHAF1A6NFY7 115 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 COLCA2A8K830 154 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BKO60814 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BJP06899 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 GYPEP15421 78 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BOP23527 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BBP33778 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 CRIP1P50238 77 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BDP58876 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BCP62807 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST2H2BEQ16778 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.02□□□□□ -1.77
VPS13C-209ENST00000560637 C9orf47Q6ZRZ4 202 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 LYPD6BQ8NI32 183 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BHQ93079 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BNQ99877 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 HIST1H2BMQ99879 126 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 MAP1LC3CQ9BXW4 147 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 GEMIN7Q9H840 131 aaKnown RBP4.02□□□□□ -1.77
VPS13C-209ENST00000560637 TMEM242Q9NWH2 141 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 C11orf21Q9P2W6 132 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 SPART-AS1P0CW21 52 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 MRPL51Q4U2R6 128 aaKnown RBP4.02□□□□□ -1.77
VPS13C-209ENST00000560637 NIT1Q86X76 327 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 ZFAND2AQ8N6M9 145 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 IGLV10-54A0A075B6I4 117 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 A0A087WWC5 75 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 M0R2P5 195 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 NPYP01303 97 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 CRIP2P52943 208 aaPredicted RBP4.02□□□□□ -1.77
VPS13C-209ENST00000560637 CACNG7P62955 275 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 SCGB1D4Q6XE38 83 aa4.02□□□□□ -1.77
VPS13C-209ENST00000560637 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-209ENST00000560637 A0A087X0K7 114 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGKV2-29A2NJV5 120 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-209ENST00000560637 AMBPP02760 352 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 ZNF479Q96JC4 524 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 TMEM191AQ9H0A3 160 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 TRAV26-1A0A087WT03 109 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 TRAV8-6A0A0B4J262 113 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 LINC00614P0C842 121 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 Q8N2B8 174 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 OR2K2Q8NGT1 345 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 C11orf45Q8TAV5 145 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 TMEM101Q96IK0 257 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 TENM1Q9UKZ4 2725 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGHV4-28A0A0C4DH34 117 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGLV2-8P01709 118 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGHV3-30P01768 117 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGHV3-33P01772 117 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 CRPP02741 224 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 PRSS2P07478 247 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGHV3-30-3P0DP02 117 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 IGHV3-30-5P0DP03 117 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 NANOS2P60321 138 aaKnown RBP4.01□□□□□ -1.77
VPS13C-209ENST00000560637 VAMP8Q9BV40 100 aa4.01□□□□□ -1.77
VPS13C-209ENST00000560637 A0A0J9YWU9 116 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 ADARB2-AS1A8MUL3 147 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 CRXO43186 299 aaPredicted RBP4□□□□□ -1.77
VPS13C-209ENST00000560637 ATP5G1P05496 136 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 FAM104BQ5XKR9 115 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 C12orf57Q99622 126 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 ZNF747Q9BV97 191 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 VCX2Q9H322 139 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 IGLV2-18A0A075B6J9 118 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 TRBV24-1A0A075B6N3 115 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 RBAKDNA6NC62 111 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 A8MWV9 139 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 MRPS12O15235 138 aaKnown RBP4□□□□□ -1.77
VPS13C-209ENST00000560637 PSCAO43653 123 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 CITED1Q99966 193 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 LY96Q9Y6Y9 160 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 LOC100131303A0A0U1RQF7 123 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 IGLV2-11P01706 119 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 ANGP03950 147 aaKnown RBP4□□□□□ -1.77
VPS13C-209ENST00000560637 MORN3Q6PF18 240 aaPredicted RBP4□□□□□ -1.77
VPS13C-209ENST00000560637 RASL11AQ6T310 242 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 MRAP2Q96G30 205 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 ZNF625Q96I27 306 aaPredicted RBP4□□□□□ -1.77
VPS13C-209ENST00000560637 GNB1LQ9BYB4 327 aa4□□□□□ -1.77
VPS13C-209ENST00000560637 HSPB8Q9UJY1 196 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms