RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TRAV8-1A0A0A6YYK1 113 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 SMIM27A0A1W2PRY6 76 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 C19orf71A6NCJ1 209 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 IZUMO1RA6ND01 250 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 TSPAN13O95857 204 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 MT-ND6P03923 174 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 HLA-DRB4P13762 266 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 HLA-DMBP28068 263 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 KRTAP10-3P60369 221 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 ERCC8Q13216 396 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 ELOBQ15370 118 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 MORN3Q6PF18 240 aaPredicted RBP3.75□□□□□ -1.81
LDLR-209ENST00000558528 SMIM15Q7Z3B0 74 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 FAM24BQ8N5W8 94 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 OR2D3Q8NGH3 330 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 FAM210BQ96KR6 192 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 VGLL1Q99990 258 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 PYGO2Q9BRQ0 406 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 RNASE7Q9H1E1 156 aaKnown RBP3.75□□□□□ -1.81
LDLR-209ENST00000558528 ZNF256Q9Y2P7 627 aaPredicted RBP3.75□□□□□ -1.81
LDLR-209ENST00000558528 V9GYV3 84 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 HLA-DRB4X5D2U9 266 aa3.75□□□□□ -1.81
LDLR-209ENST00000558528 TENM2Q9NT68 2774 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 COLCA2A8K830 154 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 A8MTW9 85 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 C1orf196B1AJZ1 125 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 KLLNB2CW77 178 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 H3BMM0 161 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 SH2D1AO60880 128 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 SCO1O75880 301 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 ORM1P02763 201 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 TYMSP04818 313 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 RAB5AP20339 215 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 PMCHP20382 165 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 S100A4P26447 101 aaKnown RBP3.74□□□□□ -1.81
LDLR-209ENST00000558528 RPS10P46783 165 aaKnown RBP3.74□□□□□ -1.81
LDLR-209ENST00000558528 RAB5BP61020 215 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 CACNG7P62955 275 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 TMEM256Q8N2U0 113 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 LINC00469Q8N7U9 141 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 ZC2HC1AQ96GY0 325 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 FAM19A4Q96LR4 140 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 GNB1LQ9BYB4 327 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 URGCP-MRPS24S4R325 110 aa3.74□□□□□ -1.81
LDLR-209ENST00000558528 LOC100131303A0A0U1RQF7 123 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 A0A1B0GUT8 65 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 A0A1B0GWB2 263 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 C7orf71A4D174 169 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 HIGD1CA8MV81 97 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 E9PLD3 99 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 HLA-DQA1P01909 254 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 RNASE4P34096 147 aaKnown RBP3.73□□□□□ -1.81
LDLR-209ENST00000558528 ASIPP42127 132 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 CRIP1P50238 77 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 ACTL10Q5JWF8 245 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 DNLZQ5SXM8 178 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 CBLN2Q8IUK8 224 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.73□□□□□ -1.81
LDLR-209ENST00000558528 FER1L6-AS1Q8NA97 138 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 PRAC1Q96KF2 57 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 LYSTQ99698 3801 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 LINC00467Q9BRT7 94 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 OCR1Q9BZK8 76 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 PLXNB1O43157 2135 aa3.73□□□□□ -1.81
LDLR-209ENST00000558528 DNAH3Q8TD57 4116 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 F6UB75 175 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 SIVA1O15304 175 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 INSP01308 110 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 OR5AL1P0C617 328 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 HBBP68871 147 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 TDRG1Q3Y452 100 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 ZFAND2AQ8N6M9 145 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 NUP35Q8NFH5 326 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 Q8TAT8 98 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 YPEL4Q96NS1 127 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 GOLT1BQ9Y3E0 138 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 TRAPPC1Q9Y5R8 145 aa3.72□□□□□ -1.81
LDLR-209ENST00000558528 IGHV1OR15-1A0A075B7D0 117 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 TGIF2-C20orf24A0A0A6YYL0 155 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 KIR2DL5BA0A0G2JN68 375 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 KIR2DL5BA0A0G2JPC4 375 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 TEX48A0A1B0GUV7 120 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 KNCNA6PVL3 124 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 SNAI2O43623 268 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 ZNF324O75467 553 aaPredicted RBP3.71□□□□□ -1.82
LDLR-209ENST00000558528 PPP1R17O96001 155 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 TRGC1P0CF51 173 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 ZNF705DP0CH99 300 aaPredicted RBP3.71□□□□□ -1.82
LDLR-209ENST00000558528 ZNF705BP0CI00 300 aaPredicted RBP3.71□□□□□ -1.82
LDLR-209ENST00000558528 ZNF80P51504 273 aaPredicted RBP3.71□□□□□ -1.82
LDLR-209ENST00000558528 APOC4P55056 127 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 RAB4BP61018 213 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 SPANXN1Q5VSR9 72 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 AMTNQ6UX39 209 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 LINC00322Q6ZN03 302 aaPredicted RBP3.71□□□□□ -1.82
LDLR-209ENST00000558528 KIR2DL5AQ8N109 375 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 KIR2DL5BQ8NHK3 375 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 FRZBQ92765 325 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 PGLYRP4Q96LB8 373 aa3.71□□□□□ -1.82
LDLR-209ENST00000558528 LINC01587Q99440 93 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms