RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CHCHD1Q96BP2 118 aaKnown RBP9□□□□□ -0.97
SHMT2-230ENST00000557427 DMBT1Q9UGM3 2413 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-230ENST00000557427 TRAV21A0A0B4J279 112 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 IGLL5B9A064 214 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 DEFB4AO15263 64 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 HSBP1O75506 76 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 CDK2AP2O75956 126 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 ZNF705DP0CH99 300 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-230ENST00000557427 ZNF705BP0CI00 300 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-230ENST00000557427 TRPT1Q86TN4 253 aaKnown RBP8.99□□□□□ -0.97
SHMT2-230ENST00000557427 NIT1Q86X76 327 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 Q8N1X5 172 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 C11orf45Q8TAV5 145 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 URB1-AS1Q96HZ7 61 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 ODF3Q96PU9 254 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 TMEM191AQ9H0A3 160 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 C11orf21Q9P2W6 132 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 NAGKQ9UJ70 344 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 AGRNO00468 2067 aa8.99□□□□□ -0.97
SHMT2-230ENST00000557427 M0R2N4 97 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 SNAI2O43623 268 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 GIG44P09565 113 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-230ENST00000557427 OR5AL1P0C617 328 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 PMCHP20382 165 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 NTF3P20783 257 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 DEFB1P60022 68 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 CACNG7P62955 275 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 PRR9Q5T870 116 aa8.98□□□□□ -0.97
SHMT2-230ENST00000557427 RNASEKQ6P5S7 137 aaKnown RBP8.98□□□□□ -0.97
SHMT2-230ENST00000557427 IGHV4-4A0A075B6R2 117 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 SCGB1D1O95968 90 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 IGKV3-20P01619 116 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 RAB4AP20338 218 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 PKIAP61925 76 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 TWIST1Q15672 202 aa8.97□□□□□ -0.97
SHMT2-230ENST00000557427 MORN3Q6PF18 240 aaPredicted RBP8.97□□□□□ -0.97
SHMT2-230ENST00000557427 KLLNB2CW77 178 aa8.96□□□□□ -0.98
SHMT2-230ENST00000557427 F6UB75 175 aa8.96□□□□□ -0.98
SHMT2-230ENST00000557427 LINC00614P0C842 121 aa8.96□□□□□ -0.98
SHMT2-230ENST00000557427 MRPL51Q4U2R6 128 aaKnown RBP8.96□□□□□ -0.98
SHMT2-230ENST00000557427 AMN1Q8IY45 258 aa8.96□□□□□ -0.98
SHMT2-230ENST00000557427 ORMDL3Q8N138 153 aa8.96□□□□□ -0.98
SHMT2-230ENST00000557427 H3BMM0 161 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 M0R2Z0 102 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 DUSP14O95147 198 aaKnown RBP8.95□□□□□ -0.98
SHMT2-230ENST00000557427 PPBPP02775 128 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 LEPP41159 167 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 FXYD7P58549 80 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 FAM19A2Q8N3H0 131 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 SCRT2Q9NQ03 307 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 XCL2Q9UBD3 114 aa8.95□□□□□ -0.98
SHMT2-230ENST00000557427 A0A0J9YX75 114 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 D6R8Y8 96 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 TSTD3H0UI37 97 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 KRTDAPP60985 99 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 EBLN2Q6P2I7 272 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 RNF185Q96GF1 192 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 PRELID3AQ96N28 172 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 LAMTOR2Q9Y2Q5 125 aa8.94□□□□□ -0.98
SHMT2-230ENST00000557427 MUC21A0A0G2JKD1 596 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 MUC21A0A140T8X8 626 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 C3orf79P0CE67 100 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 RNASE4P34096 147 aaKnown RBP8.93□□□□□ -0.98
SHMT2-230ENST00000557427 ASIPP42127 132 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 NUTF2P61970 127 aaKnown RBP8.93□□□□□ -0.98
SHMT2-230ENST00000557427 MUC21Q5SSG8 566 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 TEX43Q6ZNM6 134 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 FOXI2Q6ZQN5 318 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 Q6ZQT7 251 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 SMIM15Q7Z3B0 74 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 ZNF664Q8N3J9 261 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 Q8N976 141 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 OR10AG1Q8NH19 301 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 C11orf68Q9H3H3 251 aaKnown RBP8.93□□□□□ -0.98
SHMT2-230ENST00000557427 MSRB1Q9NZV6 116 aa8.93□□□□□ -0.98
SHMT2-230ENST00000557427 DNAH5Q8TE73 4624 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 IGHV1-24A0A0C4DH33 117 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 IGHV4-28A0A0C4DH34 117 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 LINC00587B1AMM8 73 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 J3KRW8 73 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 RBMY1A1P0DJD3 496 aaKnown RBP8.92□□□□□ -0.98
SHMT2-230ENST00000557427 RBMY1CP0DJD4 496 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 HLA-DRB4P13762 266 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 CKS2P33552 79 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 RBMY1FQ15415 496 aaKnown RBP8.92□□□□□ -0.98
SHMT2-230ENST00000557427 LGALS9BQ3B8N2 356 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 ANXA2RQ3ZCQ2 193 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 FA2HQ7L5A8 372 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 CSNK1G2-AS1Q8NCQ2 148 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 HLA-DRB4X5D2U9 266 aa8.92□□□□□ -0.98
SHMT2-230ENST00000557427 C7orf71A4D174 169 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 A8MTW9 85 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 H3BVH4 76 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 TSPOP30536 169 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 SSTP61278 116 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 SPANXN1Q5VSR9 72 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 POM121L12Q8N7R1 296 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 Q8NAQ8 132 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 PRSS3P2Q8NHM4 247 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 C1QTNF4Q9BXJ3 329 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms