RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ASIPP42127 132 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 PIK3CD-AS1Q5SR53 167 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 FAM162BQ5T6X4 162 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 SLC25A29Q8N8R3 303 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 IL36BQ9NZH7 164 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 IGHV3-73A0A0B4J1V6 119 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 TRBV6-4A0A1B0GX49 114 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 M0R036 132 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 S100A4P26447 101 aaKnown RBP7□□□□□ -1.29
CCDC88C-206ENST00000553437 LINC01559Q495D7 138 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 UFSP1Q6NVU6 142 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 Q6ZSN1 163 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 TXNDC17Q9BRA2 123 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 MLST8Q9BVC4 326 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 EIF5A2Q9GZV4 153 aaKnown RBP7□□□□□ -1.29
CCDC88C-206ENST00000553437 SCRT2Q9NQ03 307 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 SMCO4Q9NRQ5 59 aa7□□□□□ -1.29
CCDC88C-206ENST00000553437 GRIFINA4D1Z8 144 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 C9JQL5 133 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 H3BVH4 76 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 S100A9P06702 114 aaKnown RBP6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 ARMS2P0C7Q2 107 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 TIRAPP58753 221 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 LINC00315P59091 139 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 ZFP2Q6ZN57 461 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 Q6ZRN7 208 aaPredicted RBP6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 SH2D6Q7Z4S9 175 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 WFDC10BQ8IUB3 73 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 CBLN2Q8IUK8 224 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 NHLRC2Q8NBF2 726 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 SAMD10Q9BYL1 202 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 PARLQ9H300 379 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 JPT2Q9H910 190 aa6.99□□□□□ -1.29
CCDC88C-206ENST00000553437 A8MWV9 139 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 DNAH10OSP0CZ25 163 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 RHOHQ15669 191 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 BAGE2Q86Y30 109 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 C15orf54Q8N8G6 183 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 C11orf52Q96A22 123 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 PRADC1Q9BSG0 188 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 MANBALQ9NQG1 85 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 GNG13Q9P2W3 67 aa6.98□□□□□ -1.29
CCDC88C-206ENST00000553437 TMSB15BA0A087X1C1 80 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 RBFOX3A6NFN3 312 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 MGST1P10620 155 aaKnown RBP6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 RHEBQ15382 184 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 Q9UF83 564 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 TNFRSF18Q9Y5U5 241 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 LY96Q9Y6Y9 160 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 DNAH5Q8TE73 4624 aa6.97□□□□□ -1.29
CCDC88C-206ENST00000553437 HSPG2P98160 4391 aa6.96□□□□□ -1.29
CCDC88C-206ENST00000553437 LINC00694P0DN24 101 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 MED14OSP0DP75 135 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 RPL35P42766 123 aaKnown RBP6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 RPL19P84098 196 aaKnown RBP6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 LCE1DQ5T752 114 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 SFRP2Q96HF1 295 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 DERL1Q9BUN8 251 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 RPS10P5Q9NQ39 176 aa6.96□□□□□ -1.3
CCDC88C-206ENST00000553437 APOBP04114 4563 aaKnown RBP6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 C7orf77A4D0Y5 90 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 K7EP13 123 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 IGLV2-8P01709 118 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 CRYGDP07320 174 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 SRP19P09132 144 aaKnown RBP6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 CXCL1P09341 107 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 C14orf178Q8N769 122 aaPredicted RBP6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 SYT8Q8NBV8 401 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 SSBP4Q9BWG4 385 aaPredicted RBP6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 BIN3Q9NQY0 253 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 PHLDA3Q9Y5J5 127 aa6.95□□□□□ -1.3
CCDC88C-206ENST00000553437 TRAV9-2A0A087WT02 112 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 A0A087WWL8 130 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GAGE12JA6NER3 117 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 COLCA2A8K830 154 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 M0R381 172 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 RHODO00212 210 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 IFNA1P01562 189 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 MT-ND4LP03901 98 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 EVI2AP22794 236 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 KRTAP10-2P60368 255 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 RAB5BP61020 215 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GAGE1Q13065 139 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GAGE4Q13068 117 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GAGE5Q13069 117 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GAGE13Q4V321 117 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 LELP1Q5T871 98 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 ZFP82Q8N141 532 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 ATP6V0E2Q8NHE4 81 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 GTSF1LQ9H1H1 148 aa6.94□□□□□ -1.3
CCDC88C-206ENST00000553437 A0A087WWC5 75 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 IGHV3-38A0A0C4DH36 116 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 C16orf90A8MZG2 172 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 C1orf196B1AJZ1 125 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 SNAI2O43623 268 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 NDUFS6O75380 124 aaKnown RBP6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 BCL2P10415 239 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 TAGLN2P37802 199 aaKnown RBP6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 MEF2BQ02080 365 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms