RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RUSC1-AS1Q66K80 236 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 PPDPFLQ8WWR9 84 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF48Q96MX3 618 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-203ENST00000547825 HELZ2Q9BYK8 2649 aaKnown RBP4.25□□□□□ -1.73
LIMA1-203ENST00000547825 NAV2Q8IVL1 2488 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 G3V318 75 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 IGKV1-17P01599 117 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 ID1P41134 155 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 DEFB1P60022 68 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF491Q8N8L2 437 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 TP53TG1Q9Y2A0 90 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 TNFRSF18Q9Y5U5 241 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 TRAV21A0A0B4J279 112 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 KNCNA6PVL3 124 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF688P0C7X2 276 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 NHLRC4P0CG21 123 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-203ENST00000547825 CDSNQ15517 529 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 C5orf64Q2M2E5 130 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 EDA2RQ9HAV5 297 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 AGRNO00468 2067 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 IGLV3-9A0A075B6K5 115 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 F8VRH5 84 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 M0R2P5 195 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 SLC25A20O43772 301 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 FCN3O75636 299 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 CD28P10747 220 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 GP9P14770 177 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 DYNAPQ8N1N2 210 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 DDB2Q92466 427 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 RNF183Q96D59 192 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 JMJD1CQ15652 2540 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 ABCA12Q86UK0 2595 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 MT-ATP8P03928 68 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 ADORA2A-AS1P86434 159 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 OR11H6Q8NGC7 330 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 C1QTNF4Q9BXJ3 329 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 A0A1B0GXF2 115 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 F6UB75 175 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 J3QKU1 62 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 ZFP2Q6ZN57 461 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF833PQ6ZTB9 187 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 Q8N8P6 123 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 SLC50A1Q9BRV3 221 aa4.24□□□□□ -1.73
LIMA1-203ENST00000547825 TRBV7-9A0A0J9YWB2 115 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE12JA6NER3 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 USP17L23D6RBM5 183 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE7O76087 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE12FP0CL80 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE12GP0CL81 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE12IP0CL82 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 LOXP28300 417 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE4Q13068 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE5Q13069 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 GAGE6Q13070 117 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF672Q499Z4 452 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-203ENST00000547825 SIGLEC15Q6ZMC9 328 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 C2orf91Q6ZV80 131 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 LYPD1Q8N2G4 141 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 RPL39LQ96EH5 51 aaKnown RBP4.23□□□□□ -1.73
LIMA1-203ENST00000547825 DUX5Q96PT3 197 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 DPH3P1Q9H4G8 78 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 PRAC2D3DTV9 90 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 PAX8Q06710 450 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 POU2AF1Q16633 256 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 THAP8Q8NA92 274 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 C15orf53Q8NAA6 179 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 PHLDA1Q8WV24 401 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-203ENST00000547825 PRO1854Q9UHT4 67 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 SIVA1O15304 175 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 PAPPA-AS1Q5QFB9 102 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 BRD3OSQ6XYD6 125 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 AGPAT4-IT1Q9H0P7 198 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 FAM215AQ9Y5M1 114 aa4.23□□□□□ -1.73
LIMA1-203ENST00000547825 IGKV1D-37A0A075B6S9 117 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 GNRH2O43555 120 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 IFITM1P13164 125 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 FOXI1Q12951 378 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 FBXL19-AS1Q494R0 122 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 CITED2Q99967 270 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-203ENST00000547825 SMIM2Q9BVW6 85 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 BAHCC1Q9P281 2608 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 A0A087WX48 190 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 C19orf71A6NCJ1 209 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 H3BRN7 92 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 OVOL3O00110 214 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 NPFFO15130 113 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 GAS8-AS1O95177 125 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 HIST1H4AP62805 103 aaKnown RBP4.22□□□□□ -1.73
LIMA1-203ENST00000547825 MAPKAPK5-AS1Q8N8E1 139 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 ITLN2Q8WWU7 325 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-203ENST00000547825 URB1-AS1Q96HZ7 61 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 CTSZQ9UBR2 303 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 POLQO75417 2590 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 MTORP42345 2549 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 ZFYVE26Q68DK2 2539 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 TRAV12-2A0A075B6T6 113 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 SDHAF1A6NFY7 115 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 ATXN8Q156A1 80 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 C9orf153Q5TBE3 101 aa4.22□□□□□ -1.73
LIMA1-203ENST00000547825 VMO1Q7Z5L0 202 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms