RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 A0A0J9YX75 114 aa9.59□□□□□ -0.87
COL4A6-209ENST00000545689 TRACP01848 142 aa9.59□□□□□ -0.87
COL4A6-209ENST00000545689 ATP5G1P05496 136 aa9.59□□□□□ -0.87
COL4A6-209ENST00000545689 TNFRSF13BO14836 293 aaPredicted RBP9.58□□□□□ -0.88
COL4A6-209ENST00000545689 HAMPP81172 84 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 CXCL5P42830 114 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 FXYD2P54710 66 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 TEN1Q86WV5 123 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 INTS1Q8N201 2190 aaKnown RBP9.58□□□□□ -0.88
COL4A6-209ENST00000545689 ADAMTS9Q9P2N4 1935 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 IGLC6P0CF74 106 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 SPART-AS1P0CW21 52 aa9.58□□□□□ -0.88
COL4A6-209ENST00000545689 SPRY2O43597 315 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 GYPEP15421 78 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 CCDC140Q96MF4 163 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 COX7A2LO14548 114 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 MBD6Q96DN6 1003 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 SND1-IT1Q9HBX3 110 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 ACACAQ13085 2346 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 A0A096LPF7 62 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 LINC01620Q4KN68 170 aa9.57□□□□□ -0.88
COL4A6-209ENST00000545689 IGF1P05019 195 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 C20orf203Q8NBC4 194 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 TRAV4A0A0B4J268 109 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 TRBV10-1A0A0K0K1A3 114 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 C10orf142B7Z368 130 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 EBI3Q14213 229 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 VSIG2Q96IQ7 327 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 MDFICQ9P1T7 246 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 RPL39P62891 51 aaKnown RBP9.56□□□□□ -0.88
COL4A6-209ENST00000545689 YPEL4Q96NS1 127 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 ZNF318Q5VUA4 2279 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 CLPSL2Q6UWE3 100 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 FRMD6-AS1P0C7T7 363 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 Q71RC1 249 aaPredicted RBP9.56□□□□□ -0.88
COL4A6-209ENST00000545689 ZMAT4Q9H898 229 aa9.56□□□□□ -0.88
COL4A6-209ENST00000545689 IGHV1-58A0A0C4DH39 117 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 LGALS9O00182 355 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 A0A0J9YY99 117 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 ALPK3Q96L96 1907 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 LOXL1Q08397 574 aaPredicted RBP9.55□□□□□ -0.88
COL4A6-209ENST00000545689 C1orf43Q9BWL3 253 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 LMO4P61968 165 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 Q6ZQT7 251 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 LRRC75A-AS1Q8N1F1 130 aa9.55□□□□□ -0.88
COL4A6-209ENST00000545689 LY6LH3BQJ8 138 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 H3BT86 120 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 C5orf38Q86SI9 138 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 TMEM263Q8WUH6 116 aaKnown RBP9.54□□□□□ -0.88
COL4A6-209ENST00000545689 UNQ9165/PRO28630Q6UXU0 137 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 GPR179Q6PRD1 2367 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 A0A0B4J2C4 111 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 WISP2O76076 250 aa9.54□□□□□ -0.88
COL4A6-209ENST00000545689 GVINP1Q7Z2Y8 2422 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 TRBV10-2A0A0K0K1G8 114 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 TINCRA0A1B0GVN0 87 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 CRYBA4P53673 196 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 IGKV2D-24A0A075B6R9 120 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 C1orf229Q6ZS94 237 aaPredicted RBP9.53□□□□□ -0.88
COL4A6-209ENST00000545689 PKDREJQ9NTG1 2253 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 MALRD1Q5VYJ5 2156 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 INSL3P51460 131 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 LINC00322Q6ZN03 302 aaPredicted RBP9.53□□□□□ -0.88
COL4A6-209ENST00000545689 PRO3102Q9H379 93 aa9.53□□□□□ -0.88
COL4A6-209ENST00000545689 ZNF80P51504 273 aaPredicted RBP9.52□□□□□ -0.88
COL4A6-209ENST00000545689 GDF5OSQ5U4N7 250 aa9.52□□□□□ -0.89
COL4A6-209ENST00000545689 SHANK1Q9Y566 2161 aa9.52□□□□□ -0.89
COL4A6-209ENST00000545689 OPRPNQ99935 248 aaPredicted RBP9.52□□□□□ -0.89
COL4A6-209ENST00000545689 HHLA3Q9XRX5 114 aa9.52□□□□□ -0.89
COL4A6-209ENST00000545689 U3KQK5 164 aa9.52□□□□□ -0.89
COL4A6-209ENST00000545689 CAMK2N2Q96S95 79 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 TRBV12-3P01733 135 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 FOXI1Q12951 378 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 HIST2H2BCQ6DN03 193 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 JMJD7-PLA2G4BH0Y9G9 81 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 MAP6D1Q9H9H5 199 aa9.51□□□□□ -0.89
COL4A6-209ENST00000545689 GTF3C1Q12789 2109 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 PRORYQ9H606 182 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 DOCK7Q96N67 2140 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 USF3Q68DE3 2245 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 CLPSL1A2RUU4 121 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 NDUFA1O15239 70 aa9.5□□□□□ -0.89
COL4A6-209ENST00000545689 ROS1P08922 2347 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 H7C423 109 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 FUSP35637 526 aaKnown RBP eCLIP9.49□□□□□ -0.89
COL4A6-209ENST00000545689 MIAQ16674 131 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 NDUFA11Q86Y39 141 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 TTTY13Q9BZ97 58 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 ATOX1O00244 68 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 TMEM61Q8N0U2 210 aa9.49□□□□□ -0.89
COL4A6-209ENST00000545689 G3V4G9 280 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 ZFAND3Q9H8U3 227 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 ETDCA0A1B0GVM5 59 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 IGHV3-30-3P0DP02 117 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 WFDC2Q14508 124 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 NEXN-AS1Q8NBZ9 246 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 DIDO1Q9BTC0 2240 aaKnown RBP9.48□□□□□ -0.89
COL4A6-209ENST00000545689 K7EQG2 157 aa9.48□□□□□ -0.89
COL4A6-209ENST00000545689 C11orf71Q6IPW1 123 aa9.47□□□□□ -0.89
COL4A6-209ENST00000545689 Q6YL49 198 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms