RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RASL10AQ92737 203 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 PACRGQ96M98 296 aaPredicted RBP5.74□□□□□ -1.49
USP28-215ENST00000545608 KCNIP2Q9NS61 270 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 A0A087WTM6 91 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 GNRH2O43555 120 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 IFNA1P01562 189 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 MBP02144 154 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 FABP4P15090 132 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 SRIP30626 198 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 TIRAPP58753 221 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 KRTAP10-1P60331 282 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 ERVFC1-1P60608 527 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 UBE2L3P68036 154 aaKnown RBP5.73□□□□□ -1.49
USP28-215ENST00000545608 JOSD1Q15040 202 aaPredicted RBP5.73□□□□□ -1.49
USP28-215ENST00000545608 IQCJQ1A5X6 159 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 FAM159AQ6UWV7 190 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 NFE4Q86UQ8 179 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 WFDC10BQ8IUB3 73 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 FAM213BQ8TBF2 198 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 YPEL4Q96NS1 127 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 ATP5SQ99766 215 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 SPXQ9BT56 116 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 LY96Q9Y6Y9 160 aa5.73□□□□□ -1.49
USP28-215ENST00000545608 TRAV9-2A0A087WT02 112 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 LOC100131303A0A0U1RQF7 123 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 PGPA6NDG6 321 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 EPM2AB3EWF7 344 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 C9JQL5 133 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 LINC00614P0C842 121 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 GAGE1Q13065 139 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 ELOBQ15370 118 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 KHDC3LQ587J8 217 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 SCGB1C1Q8TD33 95 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 TMEM18Q96B42 140 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 SMIM3Q9BZL3 60 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 WFDC1Q9HC57 220 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 OTORQ9NRC9 128 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 MSRB1Q9NZV6 116 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 VAX2Q9UIW0 290 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 NAGKQ9UJ70 344 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 RPH3ALQ9UNE2 315 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 LENEPQ9Y5L5 61 aa5.72□□□□□ -1.49
USP28-215ENST00000545608 TRAV4A0A0B4J268 109 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 IGHV3-16A0A0C4DH30 117 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BKO60814 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 IFNA5P01569 189 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 ORM1P02763 201 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BJP06899 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 EVI2AP22794 236 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BOP23527 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BBP33778 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BDP58876 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 TAS2R45P59539 299 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BCP62807 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST2H2BEQ16778 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 ACOT6Q3I5F7 207 aaPredicted RBP5.71□□□□□ -1.5
USP28-215ENST00000545608 TDRG1Q3Y452 100 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 ZNF506Q5JVG8 444 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.71□□□□□ -1.5
USP28-215ENST00000545608 OR4C5Q8NGB2 326 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 OR2G3Q8NGZ4 309 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BHQ93079 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BNQ99877 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BMQ99879 126 aa5.71□□□□□ -1.5
USP28-215ENST00000545608 TRBV24-1A0A075B6N3 115 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 TRAV8-1A0A0A6YYK1 113 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 F6UZH7 168 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 M0R2P5 195 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 PHOX2AO14813 284 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 TYMSP04818 313 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 SRP19P09132 144 aaKnown RBP5.7□□□□□ -1.5
USP28-215ENST00000545608 TRGC1P0CF51 173 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 INAFM2P0DMQ5 153 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 GNG5P63218 68 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 GOLT1AQ6ZVE7 132 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 CMTM2Q8TAZ6 248 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 TXNDC17Q9BRA2 123 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 PRO1933Q9H354 126 aa5.7□□□□□ -1.5
USP28-215ENST00000545608 TRAV1-1A0A0B4J248 108 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 TRAV21A0A0B4J279 112 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 C9JCJ5 164 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 K7EP13 123 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 HMGB3O15347 200 aaKnown RBP5.69□□□□□ -1.5
USP28-215ENST00000545608 TRGC2P03986 189 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 CRYGDP07320 174 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 GATA1P15976 413 aaPredicted RBP5.69□□□□□ -1.5
USP28-215ENST00000545608 DGAT2L7PQ6IED9 249 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 KCNIP4Q6PIL6 250 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 SGK494Q96LW2 274 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 HIST1H2BLQ99880 126 aa5.69□□□□□ -1.5
USP28-215ENST00000545608 TGIF2-C20orf24A0A0A6YYL0 155 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 A0A1W2PPV4 95 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 IFITM10A6NMD0 228 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 SMR3BP02814 79 aaPredicted RBP5.68□□□□□ -1.5
USP28-215ENST00000545608 ZNF80P51504 273 aaPredicted RBP5.68□□□□□ -1.5
USP28-215ENST00000545608 CEBPGP53567 150 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 COTL1Q14019 142 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 COA6Q5JTJ3 125 aaKnown RBP5.68□□□□□ -1.5
USP28-215ENST00000545608 Q5VSD8 79 aa5.68□□□□□ -1.5
USP28-215ENST00000545608 PQLC2Q6ZP29 291 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms