RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TEX49A0A1B0GTD5 131 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 CDX4O14627 284 aaPredicted RBP5.04□□□□□ -1.6
USP28-207ENST00000538475 CTSGP08311 255 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 TMEM258P61165 79 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 ZNF56Q15929 161 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 Q1RN00 199 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 NSUN5P1Q3KNT7 163 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 FAM222AQ5U5X8 452 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 C9orf139Q6ZV77 190 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 C5orf38Q86SI9 138 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 TRPT1Q86TN4 253 aaKnown RBP5.04□□□□□ -1.6
USP28-207ENST00000538475 KLHL30-AS1Q8NEE0 82 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 C11orf21Q9P2W6 132 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 ICOSQ9Y6W8 199 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 MUC4Q99102 2169 aa5.04□□□□□ -1.6
USP28-207ENST00000538475 LINC01548A6NM66 108 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 INAFM2P0DMQ5 153 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 ZNF22P17026 224 aaPredicted RBP5.03□□□□□ -1.6
USP28-207ENST00000538475 CNTFRP26992 372 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 CRIP2P52943 208 aaPredicted RBP5.03□□□□□ -1.6
USP28-207ENST00000538475 HERVK_113P63121 156 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 ZNF415Q09FC8 603 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 GPHB5Q86YW7 130 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 MUSTN1Q8IVN3 82 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 MRAPQ8TCY5 172 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 DPM3Q9P2X0 92 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 PHLDA3Q9Y5J5 127 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 NACAE9PAV3 2078 aa5.03□□□□□ -1.6
USP28-207ENST00000538475 BRCA2P51587 3418 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 TRGV11A0A075B6L2 103 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 IGHV3-72A0A0B4J1Y9 119 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 NDUFC2-KCTD14E9PQ53 114 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 TRIAP1O43715 76 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 TSHBP01222 138 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 TRACP01848 142 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 LINC00694P0DN24 101 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 RNASE4P34096 147 aaKnown RBP5.02□□□□□ -1.61
USP28-207ENST00000538475 HIST1H4AP62805 103 aaKnown RBP5.02□□□□□ -1.61
USP28-207ENST00000538475 TCF15Q12870 199 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 ANXA2RQ3ZCQ2 193 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 GAGE2AQ6NT46 116 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 SFTA2Q6UW10 78 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 FAM110DQ8TAY7 271 aaPredicted RBP5.02□□□□□ -1.61
USP28-207ENST00000538475 TP53TG1Q9Y2A0 90 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 PYGO1Q9Y3Y4 419 aa5.02□□□□□ -1.61
USP28-207ENST00000538475 TRBV7-1A0A0A6YYK4 115 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 TRAV26-2A0A0B4J265 109 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 FAM236AA0A1B0GUQ0 79 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 FAM236BA0A1B0GV22 79 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 M0R1W7 72 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 ELANEP08246 267 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 PF4V1P10720 104 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 S100A4P26447 101 aaKnown RBP5.01□□□□□ -1.61
USP28-207ENST00000538475 ID1P41134 155 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 EMP1P54849 157 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 CCL8P80075 99 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 ADIPOQQ15848 244 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 MIAQ16674 131 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 LY6G5BQ8NDX9 201 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 PRSS33Q8NF86 280 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 DCANP1Q8TF63 244 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 OVOL2Q9BRP0 275 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 PIMREGQ9BSJ6 248 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 CHCHD5Q9BSY4 110 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 KLK15Q9H2R5 256 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 EDA2RQ9HAV5 297 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 CTSZQ9UBR2 303 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 KIF25-AS1Q9Y6Z4 181 aa5.01□□□□□ -1.61
USP28-207ENST00000538475 WNK2Q9Y3S1 2297 aa5□□□□□ -1.61
USP28-207ENST00000538475 PRAC2D3DTV9 90 aa5□□□□□ -1.61
USP28-207ENST00000538475 IGHV4-39P01824 125 aa5□□□□□ -1.61
USP28-207ENST00000538475 TSPEAR-AS2P59090 65 aa5□□□□□ -1.61
USP28-207ENST00000538475 MINOS1Q5TGZ0 78 aa5□□□□□ -1.61
USP28-207ENST00000538475 LYPD2Q6UXB3 125 aa5□□□□□ -1.61
USP28-207ENST00000538475 FAM19A5Q7Z5A7 132 aaPredicted RBP5□□□□□ -1.61
USP28-207ENST00000538475 RNF182Q8N6D2 247 aa5□□□□□ -1.61
USP28-207ENST00000538475 Q8N6K4 173 aa5□□□□□ -1.61
USP28-207ENST00000538475 ITLN2Q8WWU7 325 aaPredicted RBP5□□□□□ -1.61
USP28-207ENST00000538475 RNASE6Q93091 150 aaKnown RBP5□□□□□ -1.61
USP28-207ENST00000538475 FAM19A4Q96LR4 140 aa5□□□□□ -1.61
USP28-207ENST00000538475 KRTAP9-8Q9BYQ0 159 aa5□□□□□ -1.61
USP28-207ENST00000538475 MINOS1-NBL1R4GNA1 71 aa5□□□□□ -1.61
USP28-207ENST00000538475 APELAP0DMC3 54 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 LINC00315P59091 139 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 MRPS36P82909 103 aaKnown RBP4.99□□□□□ -1.61
USP28-207ENST00000538475 SEM1Q6ZVN7 128 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 TMEM61Q8N0U2 210 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 ZFAND2AQ8N6M9 145 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 C14orf178Q8N769 122 aaPredicted RBP4.99□□□□□ -1.61
USP28-207ENST00000538475 RPL39LQ96EH5 51 aaKnown RBP4.99□□□□□ -1.61
USP28-207ENST00000538475 LITAFQ99732 161 aa4.99□□□□□ -1.61
USP28-207ENST00000538475 ABCA4P78363 2273 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 IGHV1-58A0A0C4DH39 117 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 ODF3BA8MYP8 253 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 COX7A2LO14548 114 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 BCE1O60756 84 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 MGPP08493 103 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 UBE2E1P51965 193 aa4.98□□□□□ -1.61
USP28-207ENST00000538475 CIRBPQ14011 172 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms