RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DAZ3Q9NR90 486 aaKnown RBP9.81□□□□□ -0.84
VPS28-215ENST00000531924 TMSB15BA0A087X1C1 80 aa9.8□□□□□ -0.84
VPS28-215ENST00000531924 M0R381 172 aa9.8□□□□□ -0.84
VPS28-215ENST00000531924 LECT2O14960 151 aa9.8□□□□□ -0.84
VPS28-215ENST00000531924 SRRM2Q9UQ35 2752 aaKnown RBP9.79□□□□□ -0.84
VPS28-215ENST00000531924 A0A087WWL8 130 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 A0A087WX48 190 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 ARPC5O15511 151 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 LINC00694P0DN24 101 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 CRIP1P50238 77 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 ZFP82Q8N141 532 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 TCEAL7Q9BRU2 100 aa9.79□□□□□ -0.84
VPS28-215ENST00000531924 DMBT1Q9UGM3 2413 aaPredicted RBP9.78□□□□□ -0.84
VPS28-215ENST00000531924 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.78□□□□□ -0.84
VPS28-215ENST00000531924 C1QBP02746 253 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 AKR1C3P42330 323 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 ELOBQ15370 118 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 DNLZQ5SXM8 178 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 UFSP1Q6NVU6 142 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 SFRP2Q96HF1 295 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 Q9UF83 564 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 VPS13BQ7Z7G8 4022 aa9.78□□□□□ -0.84
VPS28-215ENST00000531924 IGKV2D-24A0A075B6R9 120 aa9.77□□□□□ -0.85
VPS28-215ENST00000531924 FHITP49789 147 aa9.77□□□□□ -0.85
VPS28-215ENST00000531924 RPL36AP83881 106 aaKnown RBP9.77□□□□□ -0.85
VPS28-215ENST00000531924 COX8CQ7Z4L0 72 aa9.77□□□□□ -0.85
VPS28-215ENST00000531924 BAALCQ8WXS3 180 aa9.77□□□□□ -0.85
VPS28-215ENST00000531924 RPL36ALQ969Q0 106 aaKnown RBP9.77□□□□□ -0.85
VPS28-215ENST00000531924 TRBV10-1A0A0K0K1A3 114 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 RBFOX3A6NFN3 312 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 LTAP01374 205 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 WFDC2Q14508 124 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 ZNF674Q2M3X9 581 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 LINC01559Q495D7 138 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 Q8N976 141 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 FAM30AQ9NZY2 134 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 KLK12Q9UKR0 248 aa9.76□□□□□ -0.85
VPS28-215ENST00000531924 TRBV6-1A0A0K0K1D8 114 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 TMEM262E9PQX1 116 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 PFDN1O60925 122 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 PLA2G1BP04054 148 aaKnown RBP9.75□□□□□ -0.85
VPS28-215ENST00000531924 S100A9P06702 114 aaKnown RBP9.75□□□□□ -0.85
VPS28-215ENST00000531924 RGS21Q2M5E4 152 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 NIT1Q86X76 327 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.75□□□□□ -0.85
VPS28-215ENST00000531924 UBE2WQ96B02 151 aa9.75□□□□□ -0.85
VPS28-215ENST00000531924 J3QL48 77 aa9.74□□□□□ -0.85
VPS28-215ENST00000531924 PAGE4O60829 102 aa9.74□□□□□ -0.85
VPS28-215ENST00000531924 SFT2D1Q8WV19 159 aa9.74□□□□□ -0.85
VPS28-215ENST00000531924 CYTL1Q9NRR1 136 aa9.74□□□□□ -0.85
VPS28-215ENST00000531924 TRBV7-3A0A075B6L6 115 aa9.73□□□□□ -0.85
VPS28-215ENST00000531924 A0A1B0GV50 99 aa9.73□□□□□ -0.85
VPS28-215ENST00000531924 ZNF56Q15929 161 aa9.73□□□□□ -0.85
VPS28-215ENST00000531924 FAM213BQ8TBF2 198 aa9.73□□□□□ -0.85
VPS28-215ENST00000531924 CHCHD7Q9BUK0 85 aa9.73□□□□□ -0.85
VPS28-215ENST00000531924 UMAD1C9J7I0 102 aa9.72□□□□□ -0.85
VPS28-215ENST00000531924 RAB4BP61018 213 aa9.72□□□□□ -0.85
VPS28-215ENST00000531924 Q0VG73 95 aa9.72□□□□□ -0.85
VPS28-215ENST00000531924 LINC00528Q8N1L1 170 aa9.72□□□□□ -0.85
VPS28-215ENST00000531924 ZNF471Q9BX82 626 aaPredicted RBP9.72□□□□□ -0.85
VPS28-215ENST00000531924 F5H697 171 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 SMLR1H3BR10 107 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 CRPP02741 224 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 UBE2D3P61077 147 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 UBE2D2P62837 147 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 SPANXN1Q5VSR9 72 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 BAGE2Q86Y30 109 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 C1orf43Q9BWL3 253 aa9.71□□□□□ -0.86
VPS28-215ENST00000531924 G3V3Q6 166 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 SMIM17P0DL12 118 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 SSTP61278 116 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 PKIAP61925 76 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 LINC01620Q4KN68 170 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 C14orf177Q52M58 125 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 PRR27Q6MZM9 219 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 Q6ZSA8 131 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 DNAJC30Q96LL9 226 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 MYCBP2O75592 4640 aa9.7□□□□□ -0.86
VPS28-215ENST00000531924 TRBV6-8A0A0A6YYG3 113 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 SCO2A0A1W2PP80 73 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 KANTRA0A1W2PQU2 76 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 RPL19P84098 196 aaKnown RBP9.69□□□□□ -0.86
VPS28-215ENST00000531924 FLG2Q5D862 2391 aaPredicted RBP9.69□□□□□ -0.86
VPS28-215ENST00000531924 KCNRGQ8N5I3 272 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 C15orf54Q8N8G6 183 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 OR10G8Q8NGN5 311 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 OR10AG1Q8NH19 301 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 MBD3L1Q8WWY6 194 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 CHCHD5Q9BSY4 110 aa9.69□□□□□ -0.86
VPS28-215ENST00000531924 DNAH8Q96JB1 4490 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 MUC21A0A0G2JKD1 596 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 MUC21A0A140T8X8 626 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 ANGP03950 147 aaKnown RBP9.68□□□□□ -0.86
VPS28-215ENST00000531924 CXCL1P09341 107 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 H2AFB1P0C5Y9 115 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 EIF5AP63241 154 aaKnown RBP9.68□□□□□ -0.86
VPS28-215ENST00000531924 ZNF345Q14585 488 aa9.68□□□□□ -0.86
VPS28-215ENST00000531924 A0A0D9SG52 128 aa9.67□□□□□ -0.86
VPS28-215ENST00000531924 TMEM97Q5BJF2 176 aa9.67□□□□□ -0.86
VPS28-215ENST00000531924 TMUB2Q71RG4 321 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 157.7 ms