RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 C20orf144Q9BQM9 153 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 LINC00467Q9BRT7 94 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 TENM1Q9UKZ4 2725 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 VAMP8Q9BV40 100 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 MAP1LC3CQ9BXW4 147 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 PF4P02776 101 aa15.14■□□□□ 0.01
VPS28-209ENST00000528142 C19orf73Q9NVV2 129 aa15.14■□□□□ 0.01
VPS28-209ENST00000528142 WNK1Q9H4A3 2382 aa15.14■□□□□ 0.01
VPS28-209ENST00000528142 INSP01308 110 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 SMIM17P0DL12 118 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 DDTP30046 118 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 PET117Q6UWS5 81 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 C20orf78Q9BR46 151 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 A0A087WWL8 130 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 RPL39LQ96EH5 51 aaKnown RBP15.13■□□□□ 0.01
VPS28-209ENST00000528142 PAM16Q9Y3D7 125 aa15.13■□□□□ 0.01
VPS28-209ENST00000528142 PRM2P04554 102 aa15.12■□□□□ 0.01
VPS28-209ENST00000528142 HTN1P15515 57 aa15.12■□□□□ 0.01
VPS28-209ENST00000528142 FCER1GP30273 86 aa15.12■□□□□ 0.01
VPS28-209ENST00000528142 SMIM2Q9BVW6 85 aa15.12■□□□□ 0.01
VPS28-209ENST00000528142 CRYGDP07320 174 aa15.11■□□□□ 0.01
VPS28-209ENST00000528142 SUMO2P61956 95 aaKnown RBP15.11■□□□□ 0.01
VPS28-209ENST00000528142 LINC01587Q99440 93 aa15.11■□□□□ 0.01
VPS28-209ENST00000528142 ZNF876PQ49A33 203 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 PRIMA1Q86XR5 153 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 ATOH7Q8N100 152 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 XCL2Q9UBD3 114 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 PPP1R17O96001 155 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 SUMO4Q6EEV6 95 aa15.1■□□□□ 0.01
VPS28-209ENST00000528142 FBN1P35555 2871 aaKnown RBP15.09■□□□□ 0.01
VPS28-209ENST00000528142 LINC01545Q5VT33 79 aa15.09■□□□□ 0.01
VPS28-209ENST00000528142 C20orf202A1L168 122 aa15.08■□□□□ 0.01
VPS28-209ENST00000528142 C1orf158Q8N1D5 194 aa15.08■□□□□ 0.01
VPS28-209ENST00000528142 C11orf72Q8NBR9 251 aa15.08■□□□□ 0.01
VPS28-209ENST00000528142 CITED1Q99966 193 aa15.08■□□□□ 0.01
VPS28-209ENST00000528142 TCAPO15273 167 aa15.08■□□□□ 0
VPS28-209ENST00000528142 NUTF2P61970 127 aaKnown RBP15.08■□□□□ 0
VPS28-209ENST00000528142 LAGE3Q14657 143 aa15.08■□□□□ 0
VPS28-209ENST00000528142 PTH2Q96A98 100 aa15.08■□□□□ 0
VPS28-209ENST00000528142 MCRIP2Q9BUT9 160 aaKnown RBP15.08■□□□□ 0
VPS28-209ENST00000528142 WFDC10AQ9H1F0 79 aa15.08■□□□□ 0
VPS28-209ENST00000528142 TRAV9-2A0A087WT02 112 aa15.07■□□□□ 0
VPS28-209ENST00000528142 ZNF415Q09FC8 603 aa15.07■□□□□ 0
VPS28-209ENST00000528142 MAJINQ3KP22 176 aa15.07■□□□□ 0
VPS28-209ENST00000528142 KRTAP24-1Q3LI83 254 aa15.07■□□□□ 0
VPS28-209ENST00000528142 TMEM158Q8WZ71 300 aa15.07■□□□□ 0
VPS28-209ENST00000528142 ATRQ13535 2644 aa15.07■□□□□ 0
VPS28-209ENST00000528142 SPATA45Q537H7 98 aa15.06■□□□□ 0
VPS28-209ENST00000528142 PIK3CD-AS1Q5SR53 167 aa15.06■□□□□ 0
VPS28-209ENST00000528142 FAM74A4Q5TZK3 123 aa15.06■□□□□ 0
VPS28-209ENST00000528142 IFI27L1Q96BM0 104 aa15.06■□□□□ 0
VPS28-209ENST00000528142 F5H697 171 aa15.06■□□□□ 0
VPS28-209ENST00000528142 H0Y8G0 127 aa15.06■□□□□ 0
VPS28-209ENST00000528142 M0R2P5 195 aa15.06■□□□□ 0
VPS28-209ENST00000528142 GIG44P09565 113 aaPredicted RBP15.06■□□□□ 0
VPS28-209ENST00000528142 RPL32P62910 135 aaKnown RBP15.06■□□□□ 0
VPS28-209ENST00000528142 SPATA3Q8NHX4 192 aa15.05■□□□□ -0
VPS28-209ENST00000528142 K7EMI3 77 aa15.04■□□□□ -0
VPS28-209ENST00000528142 ZNF705AQ6ZN79 300 aaPredicted RBP15.04■□□□□ -0
VPS28-209ENST00000528142 NDUFAF3Q9BU61 184 aa15.04■□□□□ -0
VPS28-209ENST00000528142 M0QY20 66 aa15.03■□□□□ -0
VPS28-209ENST00000528142 TRBV6-5A0A0K0K1A5 114 aa15.03■□□□□ -0
VPS28-209ENST00000528142 AZU1P20160 251 aa15.03■□□□□ -0
VPS28-209ENST00000528142 POLR2KP53803 58 aaKnown RBP15.03■□□□□ -0
VPS28-209ENST00000528142 ZNF56Q15929 161 aa15.03■□□□□ -0
VPS28-209ENST00000528142 SPXQ9BT56 116 aa15.03■□□□□ -0
VPS28-209ENST00000528142 CSTL1Q9H114 145 aa15.03■□□□□ -0
VPS28-209ENST00000528142 ST20Q9HBF5 79 aa15.03■□□□□ -0
VPS28-209ENST00000528142 INSL3P51460 131 aa15.02■□□□□ -0
VPS28-209ENST00000528142 DEFA6Q01524 100 aa15.02■□□□□ -0
VPS28-209ENST00000528142 ORMDL2Q53FV1 153 aa15.02■□□□□ -0
VPS28-209ENST00000528142 MORN3Q6PF18 240 aaPredicted RBP15.02■□□□□ -0
VPS28-209ENST00000528142 C14orf144Q96I85 54 aa15.02■□□□□ -0
VPS28-209ENST00000528142 C18orf15Q96N68 181 aa15.02■□□□□ -0
VPS28-209ENST00000528142 PMCHL2Q9BQD1 86 aa15.02■□□□□ -0
VPS28-209ENST00000528142 MIEN1Q9BRT3 115 aa15.02■□□□□ -0
VPS28-209ENST00000528142 TMEM208Q9BTX3 173 aa15.02■□□□□ -0
VPS28-209ENST00000528142 IGLL1P15814 213 aa15.01□□□□□ -0.01
VPS28-209ENST00000528142 LGALS9BQ3B8N2 356 aa15.01□□□□□ -0.01
VPS28-209ENST00000528142 LGALS9CQ6DKI2 356 aa15.01□□□□□ -0.01
VPS28-209ENST00000528142 UFSP1Q6NVU6 142 aa15.01□□□□□ -0.01
VPS28-209ENST00000528142 A8MWV9 139 aa15□□□□□ -0.01
VPS28-209ENST00000528142 NUDT3O95989 172 aa15□□□□□ -0.01
VPS28-209ENST00000528142 IL17DQ8TAD2 202 aa15□□□□□ -0.01
VPS28-209ENST00000528142 VWFP04275 2813 aa15□□□□□ -0.01
VPS28-209ENST00000528142 IGHV3OR16-12A0A075B7B8 117 aa14.99□□□□□ -0.01
VPS28-209ENST00000528142 IGLC3P0DOY3 106 aa14.99□□□□□ -0.01
VPS28-209ENST00000528142 RPL35AP18077 110 aaKnown RBP14.99□□□□□ -0.01
VPS28-209ENST00000528142 C9orf66Q5T8R8 295 aa14.99□□□□□ -0.01
VPS28-209ENST00000528142 EDA2RQ9HAV5 297 aa14.99□□□□□ -0.01
VPS28-209ENST00000528142 NEGR1Q7Z3B1 354 aa14.99□□□□□ -0.01
VPS28-209ENST00000528142 RNASE8Q8TDE3 154 aaKnown RBP14.99□□□□□ -0.01
VPS28-209ENST00000528142 hDV102S1A0JD36 115 aa14.98□□□□□ -0.01
VPS28-209ENST00000528142 VCYO14598 125 aa14.98□□□□□ -0.01
VPS28-209ENST00000528142 ATP5LO75964 103 aa14.98□□□□□ -0.01
VPS28-209ENST00000528142 CSNK1G2-AS1Q8NCQ2 148 aa14.98□□□□□ -0.01
VPS28-209ENST00000528142 TRBV27A0A0K0K1C4 114 aa14.97□□□□□ -0.01
VPS28-209ENST00000528142 SDHAF1A6NFY7 115 aa14.97□□□□□ -0.01
VPS28-209ENST00000528142 CFAP126Q5VTH2 177 aa14.97□□□□□ -0.01
VPS28-209ENST00000528142 TOMM6Q96B49 74 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms