RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ZC2HC1AQ96GY0 325 aa7.04□□□□□ -1.28
CPSF1-203ENST00000527916 SMLR1H3BR10 107 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 RHODO00212 210 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 PAGE4O60829 102 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 SH2D1AO60880 128 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 ARMS2P0C7Q2 107 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 EIF5AP63241 154 aaKnown RBP7.03□□□□□ -1.28
CPSF1-203ENST00000527916 LINC01559Q495D7 138 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 OR10J3Q5JRS4 329 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 SFT2D1Q8WV19 159 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 FAM30AQ9NZY2 134 aa7.03□□□□□ -1.28
CPSF1-203ENST00000527916 DNAH8Q96JB1 4490 aa7.02□□□□□ -1.29
CPSF1-203ENST00000527916 KANTRA0A1W2PQU2 76 aa7.02□□□□□ -1.29
CPSF1-203ENST00000527916 LINC00694P0DN24 101 aa7.02□□□□□ -1.29
CPSF1-203ENST00000527916 A0A087WWC5 75 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 LRCOL1A6NCL2 159 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 H3BVH4 76 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 M0R036 132 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 BCL2L11O43521 198 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 CXCL1P09341 107 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 AKR1C3P42330 323 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 LAGE3Q14657 143 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 Q8N814 137 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 FAM213BQ8TBF2 198 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 SFRP2Q96HF1 295 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 MLST8Q9BVC4 326 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 ZNF471Q9BX82 626 aaPredicted RBP7.01□□□□□ -1.29
CPSF1-203ENST00000527916 SAMD10Q9BYL1 202 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 JPT2Q9H910 190 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 PHLDA3Q9Y5J5 127 aa7.01□□□□□ -1.29
CPSF1-203ENST00000527916 FAT3Q8TDW7 4589 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 GRIFINA4D1Z8 144 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 GAGE12JA6NER3 117 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 H2AFB1P0C5Y9 115 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 TPT1P13693 172 aaKnown RBP7□□□□□ -1.29
CPSF1-203ENST00000527916 GAGE1Q13065 139 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 GAGE4Q13068 117 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 GAGE5Q13069 117 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 GAGE13Q4V321 117 aa7□□□□□ -1.29
CPSF1-203ENST00000527916 TRBV10-1A0A0K0K1A3 114 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 PFDN1O60925 122 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 TMUB2Q71RG4 321 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 ZFP82Q8N141 532 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 C14orf178Q8N769 122 aaPredicted RBP6.99□□□□□ -1.29
CPSF1-203ENST00000527916 TM2D2Q9BX73 214 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 Q9UF83 564 aa6.99□□□□□ -1.29
CPSF1-203ENST00000527916 RNF213Q63HN8 5207 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 TRAV1-1A0A0B4J248 108 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 SCO2A0A1W2PP80 73 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 IGHV3-30P01768 117 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 IGHV3-33P01772 117 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 IGHV3-30-3P0DP02 117 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 IGHV3-30-5P0DP03 117 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 RAB5CP51148 216 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 TOR2AQ5JU69 321 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 EIF5AL1Q6IS14 154 aaKnown RBP6.98□□□□□ -1.29
CPSF1-203ENST00000527916 Q6ZSA8 131 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 BAGE2Q86Y30 109 aa6.98□□□□□ -1.29
CPSF1-203ENST00000527916 SSBP4Q9BWG4 385 aaPredicted RBP6.98□□□□□ -1.29
CPSF1-203ENST00000527916 A0A087WWL8 130 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 TMSB15BA0A087X1C1 80 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 TRAV8-3A0A0A6YYJ7 113 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 M0R381 172 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 SNAI2O43623 268 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 RAB4BP61018 213 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 FAM74A4Q5TZK3 123 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 MANBALQ9NQG1 85 aa6.97□□□□□ -1.29
CPSF1-203ENST00000527916 TRBV7-3A0A075B6L6 115 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 TEX46H3BTG2 121 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 OR5AL1P0C617 328 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 RPL36AP83881 106 aaKnown RBP6.96□□□□□ -1.3
CPSF1-203ENST00000527916 OR10G8Q8NGN5 311 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 RPL36ALQ969Q0 106 aaKnown RBP6.96□□□□□ -1.3
CPSF1-203ENST00000527916 C11orf52Q96A22 123 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 CHCHD7Q9BUK0 85 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 Q9HAA7 133 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 COX11Q9Y6N1 276 aa6.96□□□□□ -1.3
CPSF1-203ENST00000527916 A0A1B0GV50 99 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 CCL20P78556 96 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 PRR27Q6MZM9 219 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 DAZ4Q86SG3 579 aaKnown RBP6.95□□□□□ -1.3
CPSF1-203ENST00000527916 NIT1Q86X76 327 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 TCTE3Q8IZS6 198 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 SMIM12Q96EX1 92 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 DAZ3Q9NR90 486 aaKnown RBP6.95□□□□□ -1.3
CPSF1-203ENST00000527916 URGCP-MRPS24S4R325 110 aa6.95□□□□□ -1.3
CPSF1-203ENST00000527916 RPL35P42766 123 aaKnown RBP6.94□□□□□ -1.3
CPSF1-203ENST00000527916 SULT1A2P50226 295 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 UBE2D3P61077 147 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 UBE2D2P62837 147 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 RPL19P84098 196 aaKnown RBP6.94□□□□□ -1.3
CPSF1-203ENST00000527916 ELOBQ15370 118 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 SCXQ7RTU7 201 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 OR10AG1Q8NH19 301 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 GNG13Q9P2W3 67 aa6.94□□□□□ -1.3
CPSF1-203ENST00000527916 SPANXN1Q5VSR9 72 aa6.93□□□□□ -1.3
CPSF1-203ENST00000527916 Q8N3U1 123 aa6.93□□□□□ -1.3
CPSF1-203ENST00000527916 RMI2Q96E14 147 aa6.93□□□□□ -1.3
CPSF1-203ENST00000527916 LRP2P98164 4655 aa6.93□□□□□ -1.3
CPSF1-203ENST00000527916 TRBV6-8A0A0A6YYG3 113 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms