RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459		A0A087WWL8	130 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	TRBV10-1	A0A0K0K1A3	114 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	USP17L23	D6RBM5	183 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	TMEM262	E9PQX1	116 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	INMT-MINDY4	F8WBC2	141 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	ARMS2	P0C7Q2	107 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	RPL36A	P83881	106 aa	Known RBP	10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	DNLZ	Q5SXM8	178 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	DGAT2L7P	Q6IED9	249 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	RPL36AL	Q969Q0	106 aa	Known RBP	10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	SFRP2	Q96HF1	295 aa		10.15	□□□□□ -0.78
LMNA-223	ENST00000515459	TRBV7-3	A0A075B6L6	115 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	TRAV34	A0A0B4J273	112 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	SSNA1	O43805	119 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	CXorf1	O96002	111 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	HLA-DQA1	P01909	254 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	UBE2D3	P61077	147 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	UBE2D2	P62837	147 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	C15orf54	Q8N8G6	183 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	PHLDA3	Q9Y5J5	127 aa		10.14	□□□□□ -0.79
LMNA-223	ENST00000515459	KRBOX1	C9JBD0	128 aa		10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	PRSS1	P07477	247 aa		10.13	□□□□□ -0.79
LMNA-223	ENST00000515459		Q6ZRU5	148 aa		10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	C9orf163	Q8N9P6	203 aa		10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	HSD17B11	Q8NBQ5	300 aa		10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	PSMG3	Q9BT73	122 aa	Predicted RBP	10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	10.13	□□□□□ -0.79
LMNA-223	ENST00000515459	TRBV6-8	A0A0A6YYG3	113 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459		A0A1W2PRE2	83 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459		M0R036	132 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	MB	P02144	154 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	ANG	P03950	147 aa	Known RBP	10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	TPT1	P13693	172 aa	Known RBP	10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	MPV17L2	Q567V2	206 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	LINC00299	Q6ZSB3	139 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	S100Z	Q8WXG8	99 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459	ZC2HC1A	Q96GY0	325 aa		10.12	□□□□□ -0.79
LMNA-223	ENST00000515459		A0A0D9SG52	128 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	GRIFIN	A4D1Z8	144 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459		A6NHS1	94 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459		M0R381	172 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	IFNA7	P01567	189 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	MIA	Q16674	131 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459		Q86TA4	180 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	MARVELD1	Q9BSK0	173 aa		10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	ACTR3C	Q9C0K3	210 aa	Predicted RBP	10.11	□□□□□ -0.79
LMNA-223	ENST00000515459	UPK1B	O75841	260 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	ATP6V0C	P27449	155 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	CRIP1	P50238	77 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	SERF2	P84101	59 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	ZFP82	Q8N141	532 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	OR10G8	Q8NGN5	311 aa		10.1	□□□□□ -0.79
LMNA-223	ENST00000515459	PANO1	I0J062	215 aa		10.09	□□□□□ -0.79
LMNA-223	ENST00000515459	SH2D1A	O60880	128 aa		10.09	□□□□□ -0.79
LMNA-223	ENST00000515459	PKIA	P61925	76 aa		10.09	□□□□□ -0.79
LMNA-223	ENST00000515459	RPL19	P84098	196 aa	Known RBP	10.09	□□□□□ -0.79
LMNA-223	ENST00000515459	CHCHD5	Q9BSY4	110 aa		10.09	□□□□□ -0.79
LMNA-223	ENST00000515459	PEX7	O00628	323 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	PTTG1	O95997	202 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	FAM162B	Q5T6X4	162 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	SDIM1	Q6ZPB5	146 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	TNFSF18	Q9UNG2	199 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	ZFP30	Q9Y2G7	519 aa		10.08	□□□□□ -0.8
LMNA-223	ENST00000515459	TMSB15B	A0A087X1C1	80 aa		10.07	□□□□□ -0.8
LMNA-223	ENST00000515459	RAB4B	P61018	213 aa		10.07	□□□□□ -0.8
LMNA-223	ENST00000515459	COX8C	Q7Z4L0	72 aa		10.07	□□□□□ -0.8
LMNA-223	ENST00000515459	NEXN-AS1	Q8NBZ9	246 aa		10.07	□□□□□ -0.8
LMNA-223	ENST00000515459	HIST1H2BA	Q96A08	127 aa		10.07	□□□□□ -0.8
LMNA-223	ENST00000515459	UBE2G2	P60604	165 aa		10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	IFITM3	Q01628	133 aa		10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	LINC01559	Q495D7	138 aa		10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	CLRN3	Q8NCR9	226 aa		10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	NKX6-2	Q9C056	277 aa	Predicted RBP	10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	PRR34	Q9NV39	138 aa		10.06	□□□□□ -0.8
LMNA-223	ENST00000515459	CIRBP	Q14011	172 aa	Known RBP	10.05	□□□□□ -0.8
LMNA-223	ENST00000515459	ZNF56	Q15929	161 aa		10.05	□□□□□ -0.8
LMNA-223	ENST00000515459	ZNF674	Q2M3X9	581 aa		10.05	□□□□□ -0.8
LMNA-223	ENST00000515459	KRTAP26-1	Q6PEX3	210 aa		10.05	□□□□□ -0.8
LMNA-223	ENST00000515459	CLPSL2	Q6UWE3	100 aa		10.05	□□□□□ -0.8
LMNA-223	ENST00000515459	UBE2G1	P62253	170 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	TMEM97	Q5BJF2	176 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	PRR27	Q6MZM9	219 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	LINC00269	Q8N2A0	174 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	DPH3	Q96FX2	82 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	FMC1	Q96HJ9	113 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	AQP10	Q96PS8	301 aa		10.04	□□□□□ -0.8
LMNA-223	ENST00000515459	CTXND1	A0A1B0GTU2	59 aa		10.03	□□□□□ -0.8
LMNA-223	ENST00000515459	FAM74A7	A6NL05	159 aa		10.03	□□□□□ -0.8
LMNA-223	ENST00000515459	CNBP	P62633	177 aa	Known RBP	10.03	□□□□□ -0.8
LMNA-223	ENST00000515459	ZNF726P1	Q15940	193 aa		10.03	□□□□□ -0.8
LMNA-223	ENST00000515459	DPH3P1	Q9H4G8	78 aa		10.03	□□□□□ -0.8
LMNA-223	ENST00000515459	RBX1	P62877	108 aa		10.02	□□□□□ -0.81
LMNA-223	ENST00000515459	NTM-AS1	Q6ZSK4	140 aa		10.02	□□□□□ -0.81
LMNA-223	ENST00000515459		A0A087WYN8	130 aa		10.01	□□□□□ -0.81
LMNA-223	ENST00000515459	hDV102S1	A0JD36	115 aa		10.01	□□□□□ -0.81
LMNA-223	ENST00000515459	GAGE6	Q13070	117 aa		10.01	□□□□□ -0.81
LMNA-223	ENST00000515459	RNF185	Q96GF1	192 aa		10.01	□□□□□ -0.81
LMNA-223	ENST00000515459	VAX2	Q9UIW0	290 aa		10.01	□□□□□ -0.81
LMNA-223	ENST00000515459	IGLV10-54	A0A075B6I4	117 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms