RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TSPAN13O95857 204 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 P01737 135 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 RBMY1DP0C7P1 496 aaKnown RBP5.98□□□□□ -1.45
SCN1A-207ENST00000507401 FGF6P10767 208 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 UBE2L3P68036 154 aaKnown RBP5.98□□□□□ -1.45
SCN1A-207ENST00000507401 IL17DQ8TAD2 202 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 C20orf173Q96LM9 149 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 SPAG8Q99932 426 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-207ENST00000507401 SLC25A2Q9BXI2 301 aa5.98□□□□□ -1.45
SCN1A-207ENST00000507401 DAZ1Q9NQZ3 744 aaKnown RBP5.98□□□□□ -1.45
SCN1A-207ENST00000507401 hDV102S1A0JD36 115 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 TMEM262E9PQX1 116 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 I3L2K1 104 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 S100A7P31151 101 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 MFAP4P55083 255 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 CMC4P56277 68 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-207ENST00000507401 PVRIGQ6DKI7 326 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 S100A7AQ86SG5 101 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 GTSF1Q8WW33 167 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 FAM110AQ9BQ89 295 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 MLST8Q9BVC4 326 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 TM2D2Q9BX73 214 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 CLEC5AQ9NY25 188 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 SPANXCQ9NY87 97 aa5.97□□□□□ -1.45
SCN1A-207ENST00000507401 IGHV3-35A0A0C4DH35 117 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 A0A1B0GUT8 65 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 TEX48A0A1B0GUV7 120 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 C19orf71A6NCJ1 209 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-207ENST00000507401 GATA2P23769 480 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-207ENST00000507401 MIR17HGQ75NE6 70 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 URB1-AS1Q96HZ7 61 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 PAXXQ9BUH6 204 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 GEMIN7Q9H840 131 aaKnown RBP5.96□□□□□ -1.46
SCN1A-207ENST00000507401 EPDR1Q9UM22 224 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 TENM2Q9NT68 2774 aa5.96□□□□□ -1.46
SCN1A-207ENST00000507401 CSMD3Q7Z407 3707 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 IGHV3-21A0A0B4J1V1 117 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 IGHV7-4-1A0A0J9YVY3 117 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 E9PLD3 99 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 COX7A2P2O60397 106 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 SPINK4O60575 86 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 LTAP01374 205 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 CAMPP49913 170 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 SMAGPQ0VAQ4 97 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 GDF5OSQ5U4N7 250 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 ZNF493Q6ZR52 646 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 CLUHP3Q96NS8 147 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 KRTAP9-8Q9BYQ0 159 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 GTSF1LQ9H1H1 148 aa5.95□□□□□ -1.46
SCN1A-207ENST00000507401 SPANXB1Q9NS25 103 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-207ENST00000507401 DYNC2H1Q8NCM8 4307 aaKnown RBP5.94□□□□□ -1.46
SCN1A-207ENST00000507401 SERTM2A0A1B0GWG4 89 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 H3BMG7 143 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 M0QXV9 152 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 HBDP02042 147 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 CRYBA4P53673 196 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 GAGE13Q4V321 117 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 C10orf113Q5VZT2 155 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 SPATA31B1PQ5VZV4 182 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 TMEM116Q8NCL8 245 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 KIR2DL5BQ8NHK3 375 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 PRSS3P2Q8NHM4 247 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 ZNF414Q96IQ9 312 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 FAM167A-AS1Q96KT0 104 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 RHPN1-AS1Q9BWJ2 59 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 WFDC10AQ9H1F0 79 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 TP53TG1Q9Y2A0 90 aa5.94□□□□□ -1.46
SCN1A-207ENST00000507401 ATP5LO75964 103 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 RNASE2P10153 161 aaKnown RBP5.93□□□□□ -1.46
SCN1A-207ENST00000507401 APOC4P55056 127 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 GAGE5Q13069 117 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 GAGE6Q13070 117 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 LYPD1Q8N2G4 141 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 THAP8Q8NA92 274 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 ZNF503Q96F45 646 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 ERG28Q9UKR5 140 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 SELENOKQ9Y6D0 94 aa5.93□□□□□ -1.46
SCN1A-207ENST00000507401 TRAV26-1A0A087WT03 109 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 LCE6AA0A183 80 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 LINC01546A6NGU7 62 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 SCGB2A1O75556 95 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 IGHV3-48P01763 117 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 APOHP02749 345 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-207ENST00000507401 EVI2AP22794 236 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 ODF3L2Q3SX64 289 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 ZFAND6Q6FIF0 208 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 OVOL2Q9BRP0 275 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 RETNQ9HD89 108 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 OTORQ9NRC9 128 aa5.92□□□□□ -1.46
SCN1A-207ENST00000507401 IGHV3OR16-8A0A075B7F1 116 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 TRAV2A0A0B4J234 112 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 A0A1B0GWB2 263 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 SPRY2O43597 315 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 CA1P00915 261 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-207ENST00000507401 SLC25A5P05141 298 aaKnown RBP5.91□□□□□ -1.46
SCN1A-207ENST00000507401 ASIPP42127 132 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 TWIST1Q15672 202 aa5.91□□□□□ -1.46
SCN1A-207ENST00000507401 SPINK9Q5DT21 86 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms