RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 IGKV3-7A0A075B6H7 116 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 A6NDX4 124 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 ZNF815PA8K554 130 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 NDUFA4O00483 81 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 IGHG2P01859 326 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 MGPP08493 103 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 DPH3P1Q9H4G8 78 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 NDUFS8O00217 210 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 RPL11P62913 178 aaKnown RBP12.34□□□□□ -0.43
COL6A1-206ENST00000498614 SCGB2A2Q13296 93 aa12.34□□□□□ -0.43
COL6A1-206ENST00000498614 MRPL16Q9NX20 251 aaKnown RBP12.34□□□□□ -0.43
COL6A1-206ENST00000498614 S100A4P26447 101 aaKnown RBP12.33□□□□□ -0.44
COL6A1-206ENST00000498614 SMCPP49901 116 aaPredicted RBP12.33□□□□□ -0.44
COL6A1-206ENST00000498614 SFTA2Q6UW10 78 aa12.33□□□□□ -0.44
COL6A1-206ENST00000498614 AKAP9Q99996 3911 aa12.33□□□□□ -0.44
COL6A1-206ENST00000498614 LINC01549A6NIU2 74 aa12.33□□□□□ -0.44
COL6A1-206ENST00000498614 PHLDA3Q9Y5J5 127 aa12.33□□□□□ -0.44
COL6A1-206ENST00000498614 APOMO95445 188 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 MSMBP08118 114 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 ANXA2RQ3ZCQ2 193 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 KLHL30-AS1Q8NEE0 82 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 LENEPQ9Y5L5 61 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 ASIPP42127 132 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 DEFB113Q30KQ7 82 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 SCGB1D4Q6XE38 83 aa12.32□□□□□ -0.44
COL6A1-206ENST00000498614 TRAV21A0A0B4J279 112 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 F6UB75 175 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 SOCS3O14543 225 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 AVPP01185 164 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 CFAP126Q5VTH2 177 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 OR10J6PQ8NGY7 276 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 USMG5Q96IX5 58 aa12.31□□□□□ -0.44
COL6A1-206ENST00000498614 GNRH2O43555 120 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 UBE2D1P51668 147 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 LINC00477Q96M19 166 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 DUSP14O95147 198 aaKnown RBP12.3□□□□□ -0.44
COL6A1-206ENST00000498614 TSPAN13O95857 204 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 CRYGDP07320 174 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 SRSF9Q13242 221 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL6A1-206ENST00000498614 ZFP2Q6ZN57 461 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 DEFB104AQ8WTQ1 72 aa12.3□□□□□ -0.44
COL6A1-206ENST00000498614 DLX4Q92988 240 aaPredicted RBP12.3□□□□□ -0.44
COL6A1-206ENST00000498614 H3BUA1 57 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 RNASE4P34096 147 aaKnown RBP12.29□□□□□ -0.44
COL6A1-206ENST00000498614 FOXI1Q12951 378 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 C1QTNF4Q9BXJ3 329 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 LOC107984156A0A0G2JMH3 177 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 TMEM238LA0A1B0GVL6 79 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 A6NJY4 79 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 OVOL1O14753 267 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 SRD5A1P18405 259 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 EDN2P20800 178 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 PSMB2P49721 201 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 EMP1P54849 157 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 TMEM95Q3KNT9 176 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 NFE4Q86UQ8 179 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 ARL17AQ8IVW1 177 aa12.29□□□□□ -0.44
COL6A1-206ENST00000498614 C11orf86A6NJI1 115 aa12.28□□□□□ -0.44
COL6A1-206ENST00000498614 TSHBP01222 138 aa12.28□□□□□ -0.44
COL6A1-206ENST00000498614 RHPN1-AS1Q9BWJ2 59 aa12.28□□□□□ -0.44
COL6A1-206ENST00000498614 A0A1B0GV72 72 aa12.28□□□□□ -0.44
COL6A1-206ENST00000498614 RNASE3P12724 160 aaKnown RBP12.28□□□□□ -0.44
COL6A1-206ENST00000498614 FLNBO75369 2602 aaKnown RBP12.28□□□□□ -0.44
COL6A1-206ENST00000498614 CSPG4Q6UVK1 2322 aa12.27□□□□□ -0.44
COL6A1-206ENST00000498614 IGLV4-69A0A075B6H9 119 aa12.27□□□□□ -0.44
COL6A1-206ENST00000498614 CD7P09564 240 aa12.27□□□□□ -0.44
COL6A1-206ENST00000498614 Q5PR19 223 aa12.27□□□□□ -0.44
COL6A1-206ENST00000498614 TEX15Q9BXT5 2789 aa12.27□□□□□ -0.45
COL6A1-206ENST00000498614 BRI3O95415 125 aa12.27□□□□□ -0.45
COL6A1-206ENST00000498614 IGLV1-40P01703 118 aa12.27□□□□□ -0.45
COL6A1-206ENST00000498614 SYT8Q8NBV8 401 aa12.27□□□□□ -0.45
COL6A1-206ENST00000498614 ZNF418Q8TF45 676 aaPredicted RBP12.26□□□□□ -0.45
COL6A1-206ENST00000498614 PTH2Q96A98 100 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 CDIP1Q9H305 208 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.26□□□□□ -0.45
COL6A1-206ENST00000498614 UBE2D3P61077 147 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 UBE2D2P62837 147 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 ATP6V0E2Q8NHE4 81 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 FAM19A4Q96LR4 140 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 TP53TG1Q9Y2A0 90 aa12.26□□□□□ -0.45
COL6A1-206ENST00000498614 ITPR3Q14573 2671 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 A0A0J9YY99 117 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 B4DSR2 109 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 MED14OSP0DP75 135 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 Q96MF0 132 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 BEX4Q9NWD9 120 aaPredicted RBP12.25□□□□□ -0.45
COL6A1-206ENST00000498614 LINC00315P59091 139 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 CKS1BP61024 79 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 FHL3Q13643 280 aa12.25□□□□□ -0.45
COL6A1-206ENST00000498614 DAZ1Q9NQZ3 744 aaKnown RBP12.25□□□□□ -0.45
COL6A1-206ENST00000498614 IGIPA6NJ69 53 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 TSPEAR-AS2P59090 65 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 CFHR3Q02985 330 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 NDUFA11Q86Y39 141 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 KRTAP1-3Q8IUG1 177 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 WFDC11Q8NEX6 87 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 JPT2Q9H910 190 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 KIF25-AS1Q9Y6Z4 181 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 TLN2Q9Y4G6 2542 aa12.24□□□□□ -0.45
COL6A1-206ENST00000498614 RPL39P62891 51 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms