RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 IGHV3-21A0A0B4J1V1 117 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 IGHV7-4-1A0A0J9YVY3 117 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 MYMXA0A1B0GTQ4 84 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 A8MWP4 228 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 SMIM1B2RUZ4 78 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 PRAC2D3DTV9 90 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 FAM72CH0Y354 149 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 IGHV1-69P01742 117 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 IGHV3-23P01764 117 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 FAM72DQ6L9T8 149 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 C2orf66Q6UXQ4 117 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 C1orf147Q96MC9 270 aaPredicted RBP2.91□□□□□ -1.94
BRCA1-220ENST00000492859 NMES1Q9C002 83 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 DYNLRB1Q9NP97 96 aa2.91□□□□□ -1.94
BRCA1-220ENST00000492859 MPDZO75970 2070 aa2.9□□□□□ -1.94
BRCA1-220ENST00000492859 GPATCH8Q9UKJ3 1502 aaKnown RBP2.9□□□□□ -1.94
BRCA1-220ENST00000492859 FAM223BA6NKX1 122 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 ZNF117Q03924 483 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 MIAQ16674 131 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 C20orf197Q8N268 126 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 C9orf106Q8NAJ2 232 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 C20orf203Q8NBC4 194 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 Q8NDZ9 215 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 SPTSSBQ8NFR3 76 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 SMIM7Q9BQ49 75 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 TIMM21Q9BVV7 248 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 KRTAP3-1Q9BYR8 98 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 GNG13Q9P2W3 67 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 E9PCH4 1651 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 PAPPA2Q9BXP8 1791 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 PCDH15Q96QU1 1955 aa2.9□□□□□ -1.95
BRCA1-220ENST00000492859 A0A1B0GWA3 101 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 hDV103S1A0JD37 113 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 A6NED7 52 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 C17orf51A8MQB3 221 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 HCG22E2RYF7 251 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 K7ERS5 55 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 LECT2O14960 151 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 ADGRB2O60241 1585 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 LY75O60449 1722 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 LY6HO94772 140 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 SLIT2O94813 1529 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 IGKV1D-33P01593 117 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 IGKV1-33P01594 117 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 IGHV4-34P06331 123 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 PRB4P10163 310 aaPredicted RBP2.89□□□□□ -1.95
BRCA1-220ENST00000492859 RPL28P46779 137 aaKnown RBP2.89□□□□□ -1.95
BRCA1-220ENST00000492859 ROMO1P60602 79 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 C1orf134Q5TEV5 83 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 LTBP4Q8N2S1 1624 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 SMCR5Q8TEV8 140 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 DIDO1Q9BTC0 2240 aaKnown RBP2.89□□□□□ -1.95
BRCA1-220ENST00000492859 CYP4F30PQ9H0H9 118 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 CD163L1Q9NR16 1453 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 CMC2Q9NRP2 79 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 ADAMTS7Q9UKP4 1686 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 MED13Q9UHV7 2174 aa2.89□□□□□ -1.95
BRCA1-220ENST00000492859 HEATR1Q9H583 2144 aaKnown RBP2.89□□□□□ -1.95
BRCA1-220ENST00000492859 COL11A1P12107 1806 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 BRWD3Q6RI45 1802 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 PARP4Q9UKK3 1724 aaKnown RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 NHSQ6T4R5 1651 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 ERCC6L2Q5T890 1561 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 IGLV1-50A0A075B6I6 118 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 IGHV3-49A0A0A0MS15 119 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 A0A0B4J2C4 111 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 E7EUB6 86 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 H3BVH4 76 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 PRH1P02810 166 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 TRGV3P03979 118 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 HMGN2P05204 90 aaKnown RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 C9orf116Q5BN46 136 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 ZCCHC23Q6ZST2 131 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 Q8N6K4 173 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 IFI27L1Q96BM0 104 aa2.88□□□□□ -1.95
BRCA1-220ENST00000492859 COL2A1P02458 1487 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 COL3A1P02461 1466 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 NCOA6Q14686 2063 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-220ENST00000492859 SHROOM3Q8TF72 1996 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 TRBV7-3A0A075B6L6 115 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 TRAV22A0A0B4J277 110 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 IGHV3-66A0A0C4DH42 116 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 A8MU10 97 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 F8WEM9 126 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 PROK1P58294 105 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 RPL36AP83881 106 aaKnown RBP2.87□□□□□ -1.95
BRCA1-220ENST00000492859 SFTA2Q6UW10 78 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 PRO1854Q9UHT4 67 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 ABCA7Q8IZY2 2146 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 HEATR5BQ9P2D3 2071 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 TRAV7A0A075B6U4 112 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 IGHV5-10-1A0A0J9YXX1 117 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 TEX49A0A1B0GTD5 131 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 A0A1B0GVX0 72 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 TMEM30CPA0ZSE6 113 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 CYSRT1A8MQ03 144 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 SH2D1AO60880 128 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 DEFA4P12838 97 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 MIFP14174 115 aa2.87□□□□□ -1.95
BRCA1-220ENST00000492859 ZNF22P17026 224 aaPredicted RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms