RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 EREGO14944 169 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 IFNA1P01562 189 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 ERVFC1-1P60608 527 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 LELP1Q5T871 98 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 PRR27Q6MZM9 219 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 UQCC3Q6UW78 93 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 SAMD10Q9BYL1 202 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 GTSF1LQ9H1H1 148 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 SCRT2Q9NQ03 307 aa10.24□□□□□ -0.77
USP39-217ENST00000491659 GAGE12JA6NER3 117 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 CXCL1P09341 107 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 RPL35P42766 123 aaKnown RBP10.23□□□□□ -0.77
USP39-217ENST00000491659 CCL20P78556 96 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 GAGE1Q13065 139 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 GAGE4Q13068 117 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 GAGE5Q13069 117 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 GAGE13Q4V321 117 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 UFSP1Q6NVU6 142 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 C11orf52Q96A22 123 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 SFRP2Q96HF1 295 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 MLST8Q9BVC4 326 aa10.23□□□□□ -0.77
USP39-217ENST00000491659 RPL19P84098 196 aaKnown RBP10.22□□□□□ -0.77
USP39-217ENST00000491659 LINC01556Q5JQF7 62 aa10.22□□□□□ -0.77
USP39-217ENST00000491659 Q6ZSN1 163 aa10.22□□□□□ -0.77
USP39-217ENST00000491659 TNFRSF18Q9Y5U5 241 aa10.22□□□□□ -0.77
USP39-217ENST00000491659 HERC2O95714 4834 aa10.22□□□□□ -0.77
USP39-217ENST00000491659 KIAA1109Q2LD37 5005 aa10.21□□□□□ -0.77
USP39-217ENST00000491659 A0A087WWL8 130 aa10.21□□□□□ -0.77
USP39-217ENST00000491659 LINC00694P0DN24 101 aa10.21□□□□□ -0.77
USP39-217ENST00000491659 C14orf178Q8N769 122 aaPredicted RBP10.21□□□□□ -0.77
USP39-217ENST00000491659 DERL1Q9BUN8 251 aa10.21□□□□□ -0.77
USP39-217ENST00000491659 PDE6DO43924 150 aa10.2□□□□□ -0.78
USP39-217ENST00000491659 KRTAP10-2P60368 255 aa10.2□□□□□ -0.78
USP39-217ENST00000491659 MEF2BQ02080 365 aaPredicted RBP10.2□□□□□ -0.78
USP39-217ENST00000491659 CENPWQ5EE01 88 aa10.2□□□□□ -0.78
USP39-217ENST00000491659 TOR2AQ5JU69 321 aa10.2□□□□□ -0.78
USP39-217ENST00000491659 IGHV3-30P01768 117 aa10.19□□□□□ -0.78
USP39-217ENST00000491659 IGHV3-33P01772 117 aa10.19□□□□□ -0.78
USP39-217ENST00000491659 IGHV3-30-3P0DP02 117 aa10.19□□□□□ -0.78
USP39-217ENST00000491659 IGHV3-30-5P0DP03 117 aa10.19□□□□□ -0.78
USP39-217ENST00000491659 A0A087WWC5 75 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 SNAI2O43623 268 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 CDK2AP2O75956 126 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 OR5AL1P0C617 328 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 BCL2P10415 239 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 GNG4P50150 75 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 OR10AG1Q8NH19 301 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 DAZAP1Q96EP5 407 aaKnown RBP10.18□□□□□ -0.78
USP39-217ENST00000491659 SMIM12Q96EX1 92 aa10.18□□□□□ -0.78
USP39-217ENST00000491659 A0A087WTM6 91 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 TRBV10-1A0A0K0K1A3 114 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 IBA57-AS1B1ANH7 110 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 PSCAO43653 123 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 TAGLN2P37802 199 aaKnown RBP10.17□□□□□ -0.78
USP39-217ENST00000491659 PEA15Q15121 130 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 ZNF56Q15929 161 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 SPANXN1Q5VSR9 72 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 VAX2Q9UIW0 290 aa10.17□□□□□ -0.78
USP39-217ENST00000491659 RPL36AP83881 106 aaKnown RBP10.16□□□□□ -0.78
USP39-217ENST00000491659 CDPF1Q6NVV7 123 aa10.16□□□□□ -0.78
USP39-217ENST00000491659 LYPD6BQ8NI32 183 aa10.16□□□□□ -0.78
USP39-217ENST00000491659 RPL36ALQ969Q0 106 aaKnown RBP10.16□□□□□ -0.78
USP39-217ENST00000491659 SSBP4Q9BWG4 385 aaPredicted RBP10.16□□□□□ -0.78
USP39-217ENST00000491659 Q9HAA7 133 aa10.16□□□□□ -0.78
USP39-217ENST00000491659 Q9UF83 564 aa10.16□□□□□ -0.78
USP39-217ENST00000491659 IGLV2-8P01709 118 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 RPS20P60866 119 aaKnown RBP10.15□□□□□ -0.78
USP39-217ENST00000491659 RAB4BP61018 213 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 LAGE3Q14657 143 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 AP1S3Q96PC3 154 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 BIN3Q9NQY0 253 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 PGPEP1Q9NXJ5 209 aa10.15□□□□□ -0.78
USP39-217ENST00000491659 MUC21A0A0G2JKD1 596 aa10.14□□□□□ -0.79
USP39-217ENST00000491659 MUC21A0A140T8X8 626 aa10.14□□□□□ -0.79
USP39-217ENST00000491659 SMIM17P0DL12 118 aa10.14□□□□□ -0.79
USP39-217ENST00000491659 OR2D3Q8NGH3 330 aa10.14□□□□□ -0.79
USP39-217ENST00000491659 URGCP-MRPS24S4R325 110 aa10.14□□□□□ -0.79
USP39-217ENST00000491659 TRBV7-3A0A075B6L6 115 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 TMEM218A2RU14 115 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 XKRY2A2RUG3 117 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 P01737 135 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 SSTP61278 116 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 FER1L6-AS1Q8NA97 138 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 OR10G8Q8NGN5 311 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 TPPP3Q9BW30 176 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 SMDT1Q9H4I9 107 aa10.13□□□□□ -0.79
USP39-217ENST00000491659 C19orf71A6NCJ1 209 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 F5H697 171 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 GZMBP10144 247 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 UBE2D3P61077 147 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 UBE2D2P62837 147 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 Q8N3U1 123 aa10.12□□□□□ -0.79
USP39-217ENST00000491659 LRP1BQ9NZR2 4599 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 TRBV20OR9-2A0A075B6H5 130 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 F8W036 122 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 APOC3P02656 99 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 IGLC6P0CF74 106 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 CACNG7P62955 275 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 KCNIP4Q6PIL6 250 aa10.11□□□□□ -0.79
USP39-217ENST00000491659 MAPKAPK5-AS1Q8N8E1 139 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms