RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FLI1Q01543 452 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 VAMP3Q15836 100 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 AKR1C8PQ5T2L2 129 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 LYPD5Q6UWN5 251 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 PRNTQ86SH4 94 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 CYB561D1Q8N8Q1 229 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 TMEM75Q8N9X5 138 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 OR2D3Q8NGH3 330 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 TXNDC17Q9BRA2 123 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 EPDR1Q9UM22 224 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 PSG8Q9UQ74 426 aa4.65□□□□□ -1.67
CCDC88A-213ENST00000476903 A0A087WWL8 130 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 CTXND1A0A1B0GTU2 59 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 GCGP01275 180 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 IGLV2-11P01706 119 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 ZNF80P51504 273 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 LINC00315P59091 139 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 SH2D6Q7Z4S9 175 aa4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 NKX6-2Q9C056 277 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 DYNC1H1Q14204 4646 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-213ENST00000476903 TRAV9-2A0A087WT02 112 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 G3V3Q6 166 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 K7EP13 123 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 ARPC5O15511 151 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 IFNA7P01567 189 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 PPT1P50897 306 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 UBE2G2P60604 165 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 ZNF726P1Q15940 193 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 ZNF876PQ49A33 203 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 DGAT2L7PQ6IED9 249 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 SPATA12Q7Z6I5 190 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 NFE4Q86UQ8 179 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 DAZAP1Q96EP5 407 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 LY96Q9Y6Y9 160 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 RYR1P21817 5038 aa4.63□□□□□ -1.67
CCDC88A-213ENST00000476903 RAB19A4D1S5 217 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 FAM74A7A6NL05 159 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 PEX7O00628 323 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 TRIAP1O43715 76 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 NDUFS6O75380 124 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 CDK2AP2O75956 126 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 GATA1P15976 413 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 FGF8P55075 233 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 SUMO4Q6EEV6 95 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 Q6ZRN7 208 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 Q86TA4 180 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 HIST1H2BAQ96A08 127 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 PTH2Q96A98 100 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 LINC00479Q96M42 142 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 C9orf85Q96MD7 179 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 PRADC1Q9BSG0 188 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 GEMIN7Q9H840 131 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 ARL2-SNX15V9GYD0 113 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 DNAH11Q96DT5 4516 aa4.62□□□□□ -1.67
CCDC88A-213ENST00000476903 LOC100131303A0A0U1RQF7 123 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 TRBV6-4A0A1B0GX49 114 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 MAP1LC3B2A6NCE7 125 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 FABP5P3A8MUU1 101 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 RS1O15537 224 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 DNAH10OSP0CZ25 163 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 MGST1P10620 155 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 RNASE3P12724 160 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 EVI2AP22794 236 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 S100A4P26447 101 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 ASIPP42127 132 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 TIRAPP58753 221 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 ERVFC1-1P60608 527 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 ZNF345Q14585 488 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 RHOHQ15669 191 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 ZNF506Q5JVG8 444 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 CFAP126Q5VTH2 177 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 WFDC10BQ8IUB3 73 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 C10orf126Q8N4M7 172 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 SLC25A29Q8N8R3 303 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 STOML3Q8TAV4 291 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 FMC1Q96HJ9 113 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 TCEAL7Q9BRU2 100 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 KRTAP4-4Q9BYR3 166 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 MAP1LC3BQ9GZQ8 125 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 CYTL1Q9NRR1 136 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 MSRB1Q9NZV6 116 aa4.61□□□□□ -1.67
CCDC88A-213ENST00000476903 IGHV3-73A0A0B4J1V6 119 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 IGKV3D-20A0A0C4DH25 116 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 C5orf52A6NGY3 159 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 A8MWV9 139 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 B4DEV8 164 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 SMLR1H3BR10 107 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 LINC00614P0C842 121 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 UBE2G1P62253 170 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 PIK3CD-AS1Q5SR53 167 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 FAM162BQ5T6X4 162 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 DPPA3Q6W0C5 159 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 KCNRGQ8N5I3 272 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 IL36BQ9NZH7 164 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 ZFP30Q9Y2G7 519 aa4.6□□□□□ -1.67
CCDC88A-213ENST00000476903 TRAV8-6A0A0B4J262 113 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 IGHV3-38A0A0C4DH36 116 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 A0A0D9SG52 128 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 TRBV6-1A0A0K0K1D8 114 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms