RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GPHB5Q86YW7 130 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 ATXN8Q156A1 80 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 Q6ZUT4 128 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 CHCHD5Q9BSY4 110 aa4.07□□□□□ -1.76
SYNE1-220ENST00000471834 A0A0B4J2C4 111 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 CRYGDP07320 174 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 EGR2P11161 476 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-220ENST00000471834 C2orf82Q6UX34 121 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 C22orf34Q6ZV56 151 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 WDR87Q6ZQQ6 2873 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV8-1A0A0A6YYK1 113 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 CLPSL1A2RUU4 121 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 BUB3O43684 328 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TNFRSF6BO95407 300 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 NDUFA11Q86Y39 141 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 ZNF843Q8N446 348 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 F8WEM9 126 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TSHBP01222 138 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 CLPSL2Q6UWE3 100 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 IMUPQ9GZP8 106 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 DKK2Q9UBU2 259 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 IGLV5-45A0A087WSX0 123 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 INAFM1C9JVW0 142 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 DUSP14O95147 198 aaKnown RBP4.06□□□□□ -1.76
SYNE1-220ENST00000471834 GAGE13Q4V321 117 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 C14orf178Q8N769 122 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TOMM6Q96B49 74 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 SPXQ9BT56 116 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 PRORYQ9H606 182 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 ERG28Q9UKR5 140 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 LGALS1P09382 135 aaKnown RBP4.06□□□□□ -1.76
SYNE1-220ENST00000471834 WFDC2Q14508 124 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 CENPFP49454 3210 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV8-3A0A0A6YYJ7 113 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 CLUHP3Q96NS8 147 aa4.06□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV12-2A0A075B6T6 113 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 H3BUX3 64 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 HLA-DMBP28068 263 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ZFAND2AQ8N6M9 145 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ARHGAP21Q5T5U3 1957 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 A0A096LPF7 62 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 OVOL1O14753 267 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ORMDL2Q53FV1 153 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 PYGO1Q9Y3Y4 419 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 IGLV4-69A0A075B6H9 119 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV3-38A0A0C4DH36 116 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 CADP27708 2225 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ZFP2Q6ZN57 461 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 SPANXCQ9NY87 97 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 LAMTOR3Q9UHA4 124 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 TANC2Q9HCD6 1990 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 RNASE13Q5GAN3 156 aaKnown RBP4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ZFAND6Q6FIF0 208 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ODF3Q96PU9 254 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 HEATR1Q9H583 2144 aaKnown RBP4.05□□□□□ -1.76
SYNE1-220ENST00000471834 ZNF876PQ49A33 203 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 AMTNQ6UX39 209 aa4.05□□□□□ -1.76
SYNE1-220ENST00000471834 TSSC4Q9Y5U2 329 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-220ENST00000471834 TET2Q6N021 2002 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-220ENST00000471834 FAM223BA6NKX1 122 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 KLLNB2CW77 178 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 H3BT86 120 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 WIPF1O43516 503 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 GHRHP01286 108 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 FAM223AQ8IWN6 122 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 TMEM213A2RRL7 107 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 E7EQL1 145 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 INSP01308 110 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 GAGE2AQ6NT46 116 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 MRPL35Q9NZE8 188 aaKnown RBP4.04□□□□□ -1.76
SYNE1-220ENST00000471834 DOCK10Q96BY6 2186 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 LEPROTO15243 131 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV26-1A0A087WT03 109 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 A8MWV9 139 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 PAX4O43316 350 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 FAM222AQ5U5X8 452 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 CEP250Q9BV73 2442 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 C11orf86A6NJI1 115 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 TIMM17BO60830 172 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 BPESC1Q9GZL8 116 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 ESM1Q9NQ30 184 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 ATRXP46100 2492 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV13-1A0A0B4J241 112 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 GAS8-AS1O95177 125 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV3-30P01768 117 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV3-30-5P0DP03 117 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 UBE2BP63146 152 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 GTSF1LQ9H1H1 148 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 NDUFA12Q9UI09 145 aa4.04□□□□□ -1.76
SYNE1-220ENST00000471834 TRBV30A0A0K0K1B3 111 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 ZNF22P17026 224 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-220ENST00000471834 SAA4P35542 130 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 BEAN1Q3B7T3 259 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 INSL3P51460 131 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 NBEAQ8NFP9 2946 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-220ENST00000471834 SPINK8P0C7L1 97 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 DIAPH2-AS1Q14236 149 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 KNCNA6PVL3 124 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 CRLF1O75462 422 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms