RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SULT1C2O00338 296 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 MT-CO2P00403 227 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 OR10J4P0C629 311 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 PTHLHP12272 177 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 KRTAP12-3P60328 96 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 TPM4P67936 248 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 Q0VG73 95 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 LGALSLQ3ZCW2 172 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-210ENST00000471439 PHF5AQ7RTV0 110 aaKnown RBP1.69□□□□□ -2.14
VPS13A-210ENST00000471439 EIF4E3Q8N5X7 224 aaKnown RBP1.69□□□□□ -2.14
VPS13A-210ENST00000471439 GATD1Q8NB37 220 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 OR10A6Q8NH74 314 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 TNFAIP8L1Q8WVP5 186 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 OR2D2Q9H210 308 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 OR51V1Q9H2C8 321 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 IFT46Q9NQC8 304 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 ARMC1Q9NVT9 282 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 LINC00474Q9P2X8 69 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 UBE2D4Q9Y2X8 147 aa1.69□□□□□ -2.14
VPS13A-210ENST00000471439 A6NED7 52 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 SDHAF1A6NFY7 115 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 K7ERS5 55 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 RPP14O95059 124 aaKnown RBP1.68□□□□□ -2.14
VPS13A-210ENST00000471439 S100A9P06702 114 aaKnown RBP1.68□□□□□ -2.14
VPS13A-210ENST00000471439 SCGB1C2P0DMR2 95 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 RHOBP62745 196 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 TNFAIP8L3Q5GJ75 292 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 KRTAP26-1Q6PEX3 210 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 OR8A1Q8NGG7 326 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 SCGB1C1Q8TD33 95 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 SPACA1Q9HBV2 294 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 TMBIM4Q9HC24 238 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 TRAPPC1Q9Y5R8 145 aa1.68□□□□□ -2.14
VPS13A-210ENST00000471439 IGKV1D-37A0A075B6S9 117 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 GTF2F2P13984 249 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 IDO1P14902 403 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 CXCR4P61073 352 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 POLR2GP62487 172 aaKnown RBP eCLIP1.67□□□□□ -2.14
VPS13A-210ENST00000471439 BAXQ07812 192 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 TRAM1Q15629 374 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 KRTAP8-1Q8IUC2 63 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 GPER1Q99527 375 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 PARD6GQ9BYG4 376 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-210ENST00000471439 COMMD5Q9GZQ3 224 aa1.67□□□□□ -2.14
VPS13A-210ENST00000471439 C14orf166Q9Y224 244 aaKnown RBP1.67□□□□□ -2.14
VPS13A-210ENST00000471439 TEX50A0A1B0GTY4 177 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 PGPA6NDG6 321 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 PDCD6O75340 191 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 TRAPPC2P0DI81 140 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 TRAPPC2BP0DI82 140 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 ETV1P50549 477 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 GZMMP51124 257 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 TCL1AP56279 114 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 SELENOWP63302 87 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 HBG1P69891 147 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 HBG2P69892 147 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 RASSF6Q6ZTQ3 369 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 AHSA2Q719I0 299 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 FAM19A3Q7Z5A8 133 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 YIPF3Q9GZM5 350 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 METTL9Q9H1A3 318 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 HRASLSQ9HDD0 168 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 DIABLOQ9NR28 239 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 TP73-AS1Q9UF72 201 aa1.66□□□□□ -2.14
VPS13A-210ENST00000471439 TRAV12-3A0A0B4J271 114 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 FABP12A6NFH5 140 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 OR4C45A6NMZ5 311 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 RIIAD1A6NNX1 92 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 IFNGP01579 166 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 CRPP02741 224 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 KRTAP12-4P60329 112 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 VSNL1P62760 191 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 RPL30P62888 115 aaKnown RBP1.65□□□□□ -2.15
VPS13A-210ENST00000471439 HIST1H1AQ02539 215 aaPredicted RBP1.65□□□□□ -2.15
VPS13A-210ENST00000471439 ELOBQ15370 118 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 GUK1Q16774 197 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 OR51A4Q8NGJ6 313 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 SLC50A1Q9BRV3 221 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 TMEM222Q9H0R3 208 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 CMC2Q9NRP2 79 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 NDUFA4L2Q9NRX3 87 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 BET1LQ9NYM9 111 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 IL20Q9NYY1 176 aa1.65□□□□□ -2.15
VPS13A-210ENST00000471439 MRPL36Q9P0J6 103 aaKnown RBP1.65□□□□□ -2.15
VPS13A-210ENST00000471439 A0A087WX48 190 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 LOC100506127A0A0U1RQW1 187 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 A0A1B0GU33 70 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 A0A1W2PNM2 257 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 C8orf87E5RJ46 101 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 CD164Q04900 197 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 TSPAN31Q12999 210 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 OR10P1Q8NGE3 313 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 CMTM2Q8TAZ6 248 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 LSM10Q969L4 123 aaKnown RBP1.64□□□□□ -2.15
VPS13A-210ENST00000471439 PGLYRP3Q96LB9 341 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 C20orf166-AS1Q96NR2 134 aa1.64□□□□□ -2.15
VPS13A-210ENST00000471439 GSTZ1O43708 216 aaPredicted RBP1.63□□□□□ -2.15
VPS13A-210ENST00000471439 SYNGR2O43760 224 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 ZNF22P17026 224 aaPredicted RBP1.63□□□□□ -2.15
VPS13A-210ENST00000471439 RPL14P50914 215 aaKnown RBP1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms