RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 ZNF674Q2M3X9 581 aa15.16■□□□□ 0.02
PTPN4-207ENST00000460162 FAM74A4Q5TZK3 123 aa15.16■□□□□ 0.02
PTPN4-207ENST00000460162 PHLDA3Q9Y5J5 127 aa15.16■□□□□ 0.02
PTPN4-207ENST00000460162 GRIFINA4D1Z8 144 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 TPT1P13693 172 aaKnown RBP15.15■□□□□ 0.02
PTPN4-207ENST00000460162 AKR1C3P42330 323 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 ZNF345Q14585 488 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 CST9LP1Q5W188 147 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 SFRP2Q96HF1 295 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 Q9UF83 564 aa15.15■□□□□ 0.02
PTPN4-207ENST00000460162 ZFP82Q8N141 532 aa15.14■□□□□ 0.01
PTPN4-207ENST00000460162 M0R381 172 aa15.12■□□□□ 0.01
PTPN4-207ENST00000460162 DAZ4Q86SG3 579 aaKnown RBP15.12■□□□□ 0.01
PTPN4-207ENST00000460162 DAZ3Q9NR90 486 aaKnown RBP15.12■□□□□ 0.01
PTPN4-207ENST00000460162 DMBT1Q9UGM3 2413 aaPredicted RBP15.12■□□□□ 0.01
PTPN4-207ENST00000460162 A0A087WWL8 130 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 TMSB15BA0A087X1C1 80 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 C1QBP02746 253 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 SEC11BP0C7V7 166 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 KCNRGQ8N5I3 272 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 COX11Q9Y6N1 276 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 URGCP-MRPS24S4R325 110 aa15.11■□□□□ 0.01
PTPN4-207ENST00000460162 HERC1Q15751 4861 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 TRBV10-1A0A0K0K1A3 114 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 UMAD1C9J7I0 102 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 SMLR1H3BR10 107 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 PAGE4O60829 102 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 SMR3BP02814 79 aaPredicted RBP15.1■□□□□ 0.01
PTPN4-207ENST00000460162 HAMPP81172 84 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 WFDC2Q14508 124 aa15.1■□□□□ 0.01
PTPN4-207ENST00000460162 FAM229AH3BQW9 127 aa15.09■□□□□ 0.01
PTPN4-207ENST00000460162 S100A9P06702 114 aaKnown RBP15.09■□□□□ 0.01
PTPN4-207ENST00000460162 NIT1Q86X76 327 aa15.09■□□□□ 0.01
PTPN4-207ENST00000460162 CXCL1P09341 107 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 RPL36AP83881 106 aaKnown RBP15.08■□□□□ 0
PTPN4-207ENST00000460162 FAM213BQ8TBF2 198 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 SFT2D1Q8WV19 159 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 MBD3L1Q8WWY6 194 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 RPL36ALQ969Q0 106 aaKnown RBP15.08■□□□□ 0
PTPN4-207ENST00000460162 RMI2Q96E14 147 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 CHCHD7Q9BUK0 85 aa15.08■□□□□ 0
PTPN4-207ENST00000460162 SRRM2Q9UQ35 2752 aaKnown RBP15.07■□□□□ 0
PTPN4-207ENST00000460162 PFDN1O60925 122 aa15.07■□□□□ 0
PTPN4-207ENST00000460162 MYCBP2O75592 4640 aa15.06■□□□□ 0
PTPN4-207ENST00000460162 TRBV7-3A0A075B6L6 115 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 SCO2A0A1W2PP80 73 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 HMSDA8MTL9 139 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 UBE2D3P61077 147 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 UBE2D2P62837 147 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 DNAH8Q96JB1 4490 aa15.05■□□□□ -0
PTPN4-207ENST00000460162 A0A087WX48 190 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 A0A0D9SG52 128 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 KANTRA0A1W2PQU2 76 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 LECT2O14960 151 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 BCL2L11O43521 198 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 Q6ZSA8 131 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 OR10G8Q8NGN5 311 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 MLST8Q9BVC4 326 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 ZNF471Q9BX82 626 aaPredicted RBP15.04■□□□□ -0
PTPN4-207ENST00000460162 FAM30AQ9NZY2 134 aa15.04■□□□□ -0
PTPN4-207ENST00000460162 A0A1B0GV50 99 aa15.03■□□□□ -0
PTPN4-207ENST00000460162 RPL19P84098 196 aaKnown RBP15.03■□□□□ -0
PTPN4-207ENST00000460162 ELOBQ15370 118 aa15.03■□□□□ -0
PTPN4-207ENST00000460162 KCNIP4Q6PIL6 250 aa15.03■□□□□ -0
PTPN4-207ENST00000460162 OR10AG1Q8NH19 301 aa15.03■□□□□ -0
PTPN4-207ENST00000460162 KLK12Q9UKR0 248 aa15.03■□□□□ -0
PTPN4-207ENST00000460162 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.02■□□□□ -0
PTPN4-207ENST00000460162 SNAI2O43623 268 aa15.02■□□□□ -0
PTPN4-207ENST00000460162 RAB4BP61018 213 aa15.02■□□□□ -0
PTPN4-207ENST00000460162 EIF5AP63241 154 aaKnown RBP15.02■□□□□ -0
PTPN4-207ENST00000460162 BAGE2Q86Y30 109 aa15.02■□□□□ -0
PTPN4-207ENST00000460162 IGKV2D-24A0A075B6R9 120 aa15.01□□□□□ -0.01
PTPN4-207ENST00000460162 ZNF56Q15929 161 aa15.01□□□□□ -0.01
PTPN4-207ENST00000460162 BAALCQ8WXS3 180 aa15.01□□□□□ -0.01
PTPN4-207ENST00000460162 FLG2Q5D862 2391 aaPredicted RBP15□□□□□ -0.01
PTPN4-207ENST00000460162 H2AFB1P0C5Y9 115 aa15□□□□□ -0.01
PTPN4-207ENST00000460162 PRR27Q6MZM9 219 aa15□□□□□ -0.01
PTPN4-207ENST00000460162 ATRAIDQ6UW56 229 aa15□□□□□ -0.01
PTPN4-207ENST00000460162 UBE2WQ96B02 151 aa15□□□□□ -0.01
PTPN4-207ENST00000460162 SSBP4Q9BWG4 385 aaPredicted RBP15□□□□□ -0.01
PTPN4-207ENST00000460162 OR5AL1P0C617 328 aa14.99□□□□□ -0.01
PTPN4-207ENST00000460162 Q8N976 141 aa14.99□□□□□ -0.01
PTPN4-207ENST00000460162 DNAJC30Q96LL9 226 aa14.99□□□□□ -0.01
PTPN4-207ENST00000460162 TRBV6-8A0A0A6YYG3 113 aa14.98□□□□□ -0.01
PTPN4-207ENST00000460162 Q0VG73 95 aa14.98□□□□□ -0.01
PTPN4-207ENST00000460162 NEXN-AS1Q8NBZ9 246 aa14.98□□□□□ -0.01
PTPN4-207ENST00000460162 SPANXN1Q5VSR9 72 aa14.97□□□□□ -0.01
PTPN4-207ENST00000460162 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.97□□□□□ -0.01
PTPN4-207ENST00000460162 MANBALQ9NQG1 85 aa14.97□□□□□ -0.01
PTPN4-207ENST00000460162 RPL35P42766 123 aaKnown RBP14.96□□□□□ -0.01
PTPN4-207ENST00000460162 TMUB2Q71RG4 321 aa14.96□□□□□ -0.01
PTPN4-207ENST00000460162 C11orf52Q96A22 123 aa14.96□□□□□ -0.01
PTPN4-207ENST00000460162 RBFOX3A6NFN3 312 aa14.95□□□□□ -0.02
PTPN4-207ENST00000460162 PKIAP61925 76 aa14.95□□□□□ -0.02
PTPN4-207ENST00000460162 AP1S3Q96PC3 154 aa14.95□□□□□ -0.02
PTPN4-207ENST00000460162 CRPP02741 224 aa14.94□□□□□ -0.02
PTPN4-207ENST00000460162 C1orf43Q9BWL3 253 aa14.94□□□□□ -0.02
PTPN4-207ENST00000460162 TMEM262E9PQX1 116 aa14.93□□□□□ -0.02
PTPN4-207ENST00000460162 PLA2G1BP04054 148 aaKnown RBP14.93□□□□□ -0.02
PTPN4-207ENST00000460162 MPV17L2Q567V2 206 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms