RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 F2Z2F3 143 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 ARMS2P0C7Q2 107 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 HLA-DRB4P13762 266 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 SRIP30626 198 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 RNASE4P34096 147 aaKnown RBP2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 CTRLP40313 264 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 CDKN1BP46527 198 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 CRIP1P50238 77 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 CMC4P56277 68 aaPredicted RBP2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 FXYD7P58549 80 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 SSTP61278 116 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 CACNG7P62955 275 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 SPINK13Q1W4C9 94 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 MUC21Q5SSG8 566 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 PRR9Q5T870 116 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 C9orf66Q5T8R8 295 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 GDF5OSQ5U4N7 250 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 SPANXN1Q5VSR9 72 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 KRTAP5-4Q6L8H1 288 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 LYZL1Q6UWQ5 148 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 FAM159AQ6UWV7 190 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 TMEM136Q6ZRR5 245 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 BAGE3Q86Y29 109 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 STHQ8IWL8 128 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 ZFAND2AQ8N6M9 145 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 GTSF1Q8WW33 167 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 KCNS1Q96KK3 526 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 SIGLEC8Q9NYZ4 499 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 TP53TG3Q9ULZ0 132 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 HLA-DRB4X5D2U9 266 aa2.76□□□□□ -1.97
HMGB3P20-201ENST00000417997 POLQO75417 2590 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 CHD6Q8TD26 2715 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 PTPN13Q12923 2485 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 TRAV12-2A0A075B6T6 113 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 MUC21A0A0G2JKD1 596 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 MUC21A0A140T8X8 626 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 KLLNB2CW77 178 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 M0R2Z0 102 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 INSP01308 110 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 MGPP08493 103 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 CD7P09564 240 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 IGLC6P0CF74 106 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 NUTF2P61970 127 aaKnown RBP2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 ZNF415Q09FC8 603 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 SLAQ13239 276 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 PDZD11Q5EBL8 140 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 OR10J3Q5JRS4 329 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 RNASEKQ6P5S7 137 aaKnown RBP2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 C12orf54Q6X4T0 127 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 APRG1Q8IVJ8 170 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 RASL10AQ92737 203 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 FAM19A4Q96LR4 140 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 TMEM208Q9BTX3 173 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 SAMD10Q9BYL1 202 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 PHLDA3Q9Y5J5 127 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 CELSR2Q9HCU4 2923 aa2.75□□□□□ -1.97
HMGB3P20-201ENST00000417997 CREBBPQ92793 2442 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 CSMD2Q7Z408 3487 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 ABCA12Q86UK0 2595 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 CSPG4Q6UVK1 2322 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 IGHV1OR15-1A0A075B7D0 117 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 LOC102724200A0A096LPH7 203 aaPredicted RBP2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 C5orf52A6NGY3 159 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 H3BMM0 161 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 M0R381 172 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 SNAI2O43623 268 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 HSBP1O75506 76 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 IGLV1-51P01701 117 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 OR5AL1P0C617 328 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 SMIM17P0DL12 118 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 PMCHP20382 165 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 NTF3P20783 257 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 INSL3P51460 131 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 FOXA3P55318 350 aaPredicted RBP2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 CTAG1AP78358 180 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 HIST3H2BBQ8N257 126 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 Q8N377 158 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 C3orf56Q8N813 242 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 GATD1Q8NB37 220 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 Q8NBF4 154 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 OR10AG1Q8NH19 301 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 AP1S3Q96PC3 154 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 CITED1Q99966 193 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 C20orf144Q9BQM9 153 aa2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 ZNF256Q9Y2P7 627 aaPredicted RBP2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 FLNAP21333 2647 aaKnown RBP2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 GCN1Q92616 2671 aaKnown RBP2.74□□□□□ -1.97
HMGB3P20-201ENST00000417997 ASH1LQ9NR48 2969 aaKnown RBP2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 TACC2O95359 2948 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 IGHV3OR16-12A0A075B7B8 117 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 RBMY1BA6NDE4 496 aaKnown RBP2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 RBMY1EA6NEQ0 496 aaKnown RBP2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 A8MTW9 85 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 D6R8Y8 96 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 PHOX2AO14813 284 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 SERF1AO75920 110 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 NCR2O95944 276 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 RBMY1DP0C7P1 496 aaKnown RBP2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 FABP4P15090 132 aa2.73□□□□□ -1.97
HMGB3P20-201ENST00000417997 HTN1P15515 57 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 151.7 ms