RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NIT1Q86X76 327 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 SYT8Q8NBV8 401 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 BOLA1Q9Y3E2 137 aa7.61□□□□□ -1.19
USP4-204ENST00000416417 MAP1LC3B2A6NCE7 125 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 G3V3Q6 166 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 J3QL48 77 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 FHITP49789 147 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 FAM162BQ5T6X4 162 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 SFRP2Q96HF1 295 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 MAP1LC3BQ9GZQ8 125 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 CYTL1Q9NRR1 136 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 PHLDA3Q9Y5J5 127 aa7.6□□□□□ -1.19
USP4-204ENST00000416417 A0A087WWC5 75 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 MUC21A0A0G2JKD1 596 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 MUC21A0A140T8X8 626 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 A0A1B0GV50 99 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 RBFOX3A6NFN3 312 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 SMLR1H3BR10 107 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 TPT1P13693 172 aaKnown RBP7.59□□□□□ -1.19
USP4-204ENST00000416417 UBE2G1P62253 170 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 RPL19P84098 196 aaKnown RBP7.59□□□□□ -1.19
USP4-204ENST00000416417 PIK3CD-AS1Q5SR53 167 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 DNLZQ5SXM8 178 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 CST9LP1Q5W188 147 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 SCXQ7RTU7 201 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 HIST1H2BAQ96A08 127 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 UBE2WQ96B02 151 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 URGCP-MRPS24S4R325 110 aa7.59□□□□□ -1.19
USP4-204ENST00000416417 RHODO00212 210 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 C1QBP02746 253 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 ZNF674Q2M3X9 581 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 TOR2AQ5JU69 321 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 FMC1Q96HJ9 113 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 ZFP30Q9Y2G7 519 aa7.58□□□□□ -1.2
USP4-204ENST00000416417 ARPC5O15511 151 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 PAGE4O60829 102 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 LTAP01374 205 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 PLA2G1BP04054 148 aaKnown RBP7.57□□□□□ -1.2
USP4-204ENST00000416417 SSTP61278 116 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 LINC01559Q495D7 138 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 A0A087WX48 190 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 AKR1C3P42330 323 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 UBE2D3P61077 147 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 UBE2D2P62837 147 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 COX8CQ7Z4L0 72 aa7.57□□□□□ -1.2
USP4-204ENST00000416417 NKX6-2Q9C056 277 aaPredicted RBP7.57□□□□□ -1.2
USP4-204ENST00000416417 SCO2A0A1W2PP80 73 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 TMEM262E9PQX1 116 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 RPL36AP83881 106 aaKnown RBP7.56□□□□□ -1.2
USP4-204ENST00000416417 ZFP82Q8N141 532 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 Q8N976 141 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 OR10AG1Q8NH19 301 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 STOML3Q8TAV4 291 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 RPL36ALQ969Q0 106 aaKnown RBP7.56□□□□□ -1.2
USP4-204ENST00000416417 RMI2Q96E14 147 aa7.56□□□□□ -1.2
USP4-204ENST00000416417 ZNF56Q15929 161 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 ENHOQ6UWT2 76 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 C15orf54Q8N8G6 183 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 NEXN-AS1Q8NBZ9 246 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 BATF3Q9NR55 127 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 COX11Q9Y6N1 276 aa7.55□□□□□ -1.2
USP4-204ENST00000416417 TRBV7-3A0A075B6L6 115 aa7.54□□□□□ -1.2
USP4-204ENST00000416417 TRBV6-1A0A0K0K1D8 114 aa7.54□□□□□ -1.2
USP4-204ENST00000416417 MPV17L2Q567V2 206 aa7.54□□□□□ -1.2
USP4-204ENST00000416417 FAM213BQ8TBF2 198 aa7.54□□□□□ -1.2
USP4-204ENST00000416417 CIRBP-AS1Q8TBR5 109 aa7.54□□□□□ -1.2
USP4-204ENST00000416417 TRBV10-1A0A0K0K1A3 114 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 KRTAP10-4P60372 401 aaPredicted RBP7.53□□□□□ -1.2
USP4-204ENST00000416417 PRR27Q6MZM9 219 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 KCNIP4Q6PIL6 250 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 CLPSL2Q6UWE3 100 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 SFT2D1Q8WV19 159 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 CHAC1Q9BUX1 264 aa7.53□□□□□ -1.2
USP4-204ENST00000416417 TRBV6-8A0A0A6YYG3 113 aa7.52□□□□□ -1.2
USP4-204ENST00000416417 KRTAP29-1A8MX34 341 aaPredicted RBP7.52□□□□□ -1.2
USP4-204ENST00000416417 IGLV2-8P01709 118 aa7.52□□□□□ -1.2
USP4-204ENST00000416417 ANGP03950 147 aaKnown RBP7.52□□□□□ -1.2
USP4-204ENST00000416417 DEFB104AQ8WTQ1 72 aa7.52□□□□□ -1.2
USP4-204ENST00000416417 CHCHD5Q9BSY4 110 aa7.52□□□□□ -1.2
USP4-204ENST00000416417 LRP1Q07954 4544 aaKnown RBP7.52□□□□□ -1.21
USP4-204ENST00000416417 F5H697 171 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 HLA-DQA1P01909 254 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 SEC11BP0C7V7 166 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 RAB4BP61018 213 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 ELOBQ15370 118 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 ATRAIDQ6UW56 229 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 NTM-AS1Q6ZSK4 140 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 BAGE2Q86Y30 109 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 OR10G8Q8NGN5 311 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 C1orf43Q9BWL3 253 aa7.52□□□□□ -1.21
USP4-204ENST00000416417 ZNF471Q9BX82 626 aaPredicted RBP7.52□□□□□ -1.21
USP4-204ENST00000416417 USP17L23D6RBM5 183 aa7.51□□□□□ -1.21
USP4-204ENST00000416417 CRPP02741 224 aa7.51□□□□□ -1.21
USP4-204ENST00000416417 SPANXN1Q5VSR9 72 aa7.51□□□□□ -1.21
USP4-204ENST00000416417 CHCHD7Q9BUK0 85 aa7.51□□□□□ -1.21
USP4-204ENST00000416417 MLST8Q9BVC4 326 aa7.51□□□□□ -1.21
USP4-204ENST00000416417 GZMBP10144 247 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 Q0VG73 95 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 GAGE6Q13070 117 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 KCNRGQ8N5I3 272 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms