RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MYCNOSP40205 109 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 IGKV3OR2-268A0A0C4DH90 116 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 A0A1B0GX51 115 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 LRRK2Q5S007 2527 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 SUMO2P61956 95 aaKnown RBP9.25□□□□□ -0.93
HMGB1-206ENST00000405805 PTPRBP23467 1997 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 IGKV2D-26A0A0A0MRZ7 120 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 ADARB2-AS1A8MUL3 147 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 LINC00477Q96M19 166 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 KAAG1Q9UBP8 84 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 IGKV3D-7A0A0C4DH55 119 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 PAX8Q06710 450 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 BPESC1Q9GZL8 116 aa9.25□□□□□ -0.93
HMGB1-206ENST00000405805 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-206ENST00000405805 IGLV2-11P01706 119 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 CTSGP08311 255 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 PDE6HQ13956 83 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 KLK5Q9Y337 293 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-206ENST00000405805 IGHV3-73A0A0B4J1V6 119 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 TEX49A0A1B0GTD5 131 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 hADV29S1A0JD25 119 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 FANCD2OSQ96PS1 177 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 TAL2Q16559 108 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 Q6ZQT7 251 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 WFDC11Q8NEX6 87 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 C7orf69Q9H7B7 122 aa9.24□□□□□ -0.93
HMGB1-206ENST00000405805 IGHV3OR16-12A0A075B7B8 117 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 TCL1BO95988 128 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 ORMDL2Q53FV1 153 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 LINC01548A6NM66 108 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 SLC50A1Q9BRV3 221 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 C11orf68Q9H3H3 251 aaKnown RBP9.23□□□□□ -0.93
HMGB1-206ENST00000405805 HIVEP2P31629 2446 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 FN1P02751 2386 aaKnown RBP9.23□□□□□ -0.93
HMGB1-206ENST00000405805 MORN3Q6PF18 240 aaPredicted RBP9.23□□□□□ -0.93
HMGB1-206ENST00000405805 LINC00574Q9H8X3 128 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 MSRB2Q9Y3D2 182 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 Q8N1Y9 231 aa9.23□□□□□ -0.93
HMGB1-206ENST00000405805 AGRNO00468 2067 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 CFC1BP0CG36 223 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 CFC1P0CG37 223 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 FAM19A5Q7Z5A7 132 aaPredicted RBP9.22□□□□□ -0.93
HMGB1-206ENST00000405805 RPL39LQ96EH5 51 aaKnown RBP9.22□□□□□ -0.93
HMGB1-206ENST00000405805 RNF5Q99942 180 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 V9GYY9 64 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 TRAV12-1A0A0B4J245 112 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 ZZEF1O43149 2961 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 PAPPA-AS1Q5QFB9 102 aa9.22□□□□□ -0.93
HMGB1-206ENST00000405805 CSDC2Q9Y534 153 aaKnown RBP9.22□□□□□ -0.93
HMGB1-206ENST00000405805 F8VRH5 84 aa9.21□□□□□ -0.93
HMGB1-206ENST00000405805 ABCA12Q86UK0 2595 aa9.21□□□□□ -0.93
HMGB1-206ENST00000405805 GNRH2O43555 120 aa9.21□□□□□ -0.93
HMGB1-206ENST00000405805 MTORP42345 2549 aa9.21□□□□□ -0.94
HMGB1-206ENST00000405805 IGF1P05019 195 aa9.21□□□□□ -0.94
HMGB1-206ENST00000405805 LINC01620Q4KN68 170 aa9.21□□□□□ -0.94
HMGB1-206ENST00000405805 C10orf105Q8TEF2 133 aa9.21□□□□□ -0.94
HMGB1-206ENST00000405805 TOMM7Q9P0U1 55 aa9.21□□□□□ -0.94
HMGB1-206ENST00000405805 IGLV11-55A0A075B6I3 123 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 IGHV7-81A0A0B4J1V7 117 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 INS-IGF2F8WCM5 200 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 C2orf66Q6UXQ4 117 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 PKD1L2Q7Z442 2459 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 OVOL3O00110 214 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 TM2D2Q9BX73 214 aa9.2□□□□□ -0.94
HMGB1-206ENST00000405805 RNF152Q8N8N0 203 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 ATP6V0E2Q8NHE4 81 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 TNFRSF18Q9Y5U5 241 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 TRAV12-2A0A075B6T6 113 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 RHODO00212 210 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 FSTL3O95633 263 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 Q8N8P6 123 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 TMEM243Q9BU79 118 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 TINCRA0A1B0GVN0 87 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 H3BUX3 64 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 ZFP36P26651 326 aaKnown RBP9.19□□□□□ -0.94
HMGB1-206ENST00000405805 HIGD1BQ9P298 99 aa9.19□□□□□ -0.94
HMGB1-206ENST00000405805 IGLC6P0CF74 106 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 GNLYP22749 145 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 PRB2P02812 416 aaPredicted RBP9.18□□□□□ -0.94
HMGB1-206ENST00000405805 LGALS1P09382 135 aaKnown RBP9.18□□□□□ -0.94
HMGB1-206ENST00000405805 CDSNQ15517 529 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 MAPKAPK5-AS1Q8N8E1 139 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 MAPK1IP1LQ8NDC0 245 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 JMJD1CQ15652 2540 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 NDUFA7O95182 113 aa9.18□□□□□ -0.94
HMGB1-206ENST00000405805 DSCR8Q96T75 97 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 RHPN1-AS1Q9BWJ2 59 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 WI2-2373I1.2A0A1W2PRP0 233 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 KNCNA6PVL3 124 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 BUB3O43684 328 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 ZNF493Q6ZR52 646 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 C8orf31Q8N9H6 132 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 DNAJC30Q96LL9 226 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 PEMTQ9UBM1 199 aa9.17□□□□□ -0.94
HMGB1-206ENST00000405805 EPG5Q9HCE0 2579 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 M0R1W7 72 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 TP53TG1Q9Y2A0 90 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 A0A087WX48 190 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 CRYGBP07316 175 aa9.16□□□□□ -0.94
HMGB1-206ENST00000405805 LINC01559Q495D7 138 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms