RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HOXB4P17483 251 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 TMEM61Q8N0U2 210 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 TDRG1Q3Y452 100 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 PLA2G2CQ5R387 149 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 RMI2Q96E14 147 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 NPBQ8NG41 125 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 FAM167A-AS1Q96KT0 104 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 MAPK1IP1LQ8NDC0 245 aa7.99□□□□□ -1.13
LIMCH1-203ENST00000396595 IGLV11-55A0A075B6I3 123 aa7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 LGALS9O00182 355 aa7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 COX7B2Q8TF08 81 aa7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 ANAPC1Q9H1A4 1944 aa7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 IGKV2-29A2NJV5 120 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 RPL39LQ96EH5 51 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 LOXL1Q08397 574 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-203ENST00000396595 KMT2EQ8IZD2 1858 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 Q96MF0 132 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 IGHV7-81A0A0B4J1V7 117 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 HIST2H2BCQ6DN03 193 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 HIST2H2BDQ6DRA6 164 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 MSRB1Q9NZV6 116 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 ZGRF1Q86YA3 2104 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 CCDC179H3BU77 68 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 LINC00694P0DN24 101 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 GTSF1Q8WW33 167 aa7.97□□□□□ -1.13
LIMCH1-203ENST00000396595 NDUFC1O43677 76 aa7.96□□□□□ -1.13
LIMCH1-203ENST00000396595 PMAIP1Q13794 54 aa7.96□□□□□ -1.13
LIMCH1-203ENST00000396595 A0A0J9YXV3 536 aa7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 CTSGP08311 255 aa7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 UBE2AP49459 152 aa7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 XCL1P47992 114 aa7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 VPREB3Q9UKI3 123 aa7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 NOP10Q9NPE3 64 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-203ENST00000396595 CLEC2BQ92478 149 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 MGAMO43451 1857 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 PRSS33Q8NF86 280 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 OPRPNQ99935 248 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 SDIM1Q6ZPB5 146 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 NACAE9PAV3 2078 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 DYSFO75923 2080 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 TRBV6-1A0A0K0K1D8 114 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 CTRLP40313 264 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 CLPSL2Q6UWE3 100 aa7.95□□□□□ -1.14
LIMCH1-203ENST00000396595 SPRY2O43597 315 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 FAM110AQ9BQ89 295 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 SMIM26A0A096LP01 95 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 SPRNQ5BIV9 151 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 IGFL2Q6UWQ7 119 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 Q8N1Y9 231 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 FANCD2OSQ96PS1 177 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 A0A096LPF7 62 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 WI2-2373I1.2A0A1W2PRP0 233 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 MED14OSP0DP75 135 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 E9PLD3 99 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 DEFB112Q30KQ8 113 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 SND1-IT1Q9HBX3 110 aa7.94□□□□□ -1.14
LIMCH1-203ENST00000396595 IGHV4-59P01825 116 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 ATP5EP2Q5VTU8 51 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 C5orf38Q86SI9 138 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 TIMM17AQ99595 171 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 HIGD2BQ4VC39 106 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 C9orf47Q6ZRZ4 202 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 PIP4P1Q86T03 277 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 AJUBAQ96IF1 538 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 C11orf1Q9H5F2 150 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 SERP2Q8N6R1 65 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 NOTCH4Q99466 2003 aa7.93□□□□□ -1.14
LIMCH1-203ENST00000396595 IGHV4-4A0A075B6R2 117 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 DAZ2Q13117 558 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 DAZ4Q86SG3 579 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 DAZ3Q9NR90 486 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 PLCE1Q9P212 2302 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 IGKV1OR2-108A0A075B7D4 117 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 TCL1BO95988 128 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 TOMM6Q96B49 74 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 RITA1Q96K30 269 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 ATRXP46100 2492 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 KIAA1671Q9BY89 1806 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 PDE6GP18545 87 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 Q8N9W7 124 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 TTTY13Q9BZ97 58 aa7.92□□□□□ -1.14
LIMCH1-203ENST00000396595 TEX22C9J3V5 150 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 K7EQD1 137 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 CCL24O00175 119 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 LECT2O14960 151 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 IGLV2-23P01705 113 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 IGLV2-14P01704 120 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 ODF1Q14990 250 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 DKK4Q9UBT3 224 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 PRAC2D3DTV9 90 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 TMEM256-PLSCR3K7ERE1 68 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 PCNX2A6NKB5 2137 aa7.91□□□□□ -1.14
LIMCH1-203ENST00000396595 C19orf71A6NCJ1 209 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 C11orf86A6NJI1 115 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 COX7CP15954 63 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 C16orf74Q96GX8 76 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 A0A0J9YY99 117 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 IGLV1-47P01700 117 aa7.9□□□□□ -1.14
LIMCH1-203ENST00000396595 PIFOQ8TCI5 191 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms