RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 Q6ZSN1 163 aa11.41□□□□□ -0.58
HMGN4-201ENST00000377575 SFRP2Q96HF1 295 aa11.41□□□□□ -0.58
HMGN4-201ENST00000377575 SAMD10Q9BYL1 202 aa11.41□□□□□ -0.58
HMGN4-201ENST00000377575 hCG_2014768A0A024R1R8 64 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 GAGE12JA6NER3 117 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 LINC00694P0DN24 101 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 GAGE1Q13065 139 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 GAGE4Q13068 117 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 GAGE5Q13069 117 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 GAGE13Q4V321 117 aa11.4□□□□□ -0.58
HMGN4-201ENST00000377575 A0A087WWL8 130 aa11.39□□□□□ -0.59
HMGN4-201ENST00000377575 PDE6DO43924 150 aa11.39□□□□□ -0.59
HMGN4-201ENST00000377575 RPL19P84098 196 aaKnown RBP11.39□□□□□ -0.59
HMGN4-201ENST00000377575 MEF2BQ02080 365 aaPredicted RBP11.39□□□□□ -0.59
HMGN4-201ENST00000377575 C14orf178Q8N769 122 aaPredicted RBP11.39□□□□□ -0.59
HMGN4-201ENST00000377575 DERL1Q9BUN8 251 aa11.39□□□□□ -0.59
HMGN4-201ENST00000377575 CENPWQ5EE01 88 aa11.38□□□□□ -0.59
HMGN4-201ENST00000377575 C9orf62Q8N4C0 152 aa11.38□□□□□ -0.59
HMGN4-201ENST00000377575 SMIM12Q96EX1 92 aa11.38□□□□□ -0.59
HMGN4-201ENST00000377575 TNFRSF18Q9Y5U5 241 aa11.38□□□□□ -0.59
HMGN4-201ENST00000377575 BCL2P10415 239 aa11.37□□□□□ -0.59
HMGN4-201ENST00000377575 TAGLN2P37802 199 aaKnown RBP11.37□□□□□ -0.59
HMGN4-201ENST00000377575 A0A087WWC5 75 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 TRBV10-1A0A0K0K1A3 114 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 SNAI2O43623 268 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 OR5AL1P0C617 328 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 GNG4P50150 75 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 KRTAP10-2P60368 255 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 OR10AG1Q8NH19 301 aa11.36□□□□□ -0.59
HMGN4-201ENST00000377575 CDK2AP2O75956 126 aa11.35□□□□□ -0.59
HMGN4-201ENST00000377575 SPANXN1Q5VSR9 72 aa11.35□□□□□ -0.59
HMGN4-201ENST00000377575 DAZAP1Q96EP5 407 aaKnown RBP11.35□□□□□ -0.59
HMGN4-201ENST00000377575 SSBP4Q9BWG4 385 aaPredicted RBP11.35□□□□□ -0.59
HMGN4-201ENST00000377575 VAX2Q9UIW0 290 aa11.35□□□□□ -0.59
HMGN4-201ENST00000377575 IBA57-AS1B1ANH7 110 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 IGHV3-30P01768 117 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 IGHV3-33P01772 117 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 IGHV3-30-3P0DP02 117 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 IGHV3-30-5P0DP03 117 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 ZNF56Q15929 161 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 BIN3Q9NQY0 253 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 MED9Q9NWA0 146 aa11.34□□□□□ -0.59
HMGN4-201ENST00000377575 LRP1BQ9NZR2 4599 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 A0A087WTM6 91 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 PSCAO43653 123 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 IGLV2-8P01709 118 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 RPS20P60866 119 aaKnown RBP11.33□□□□□ -0.6
HMGN4-201ENST00000377575 RAB4BP61018 213 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 RPL36AP83881 106 aaKnown RBP11.33□□□□□ -0.6
HMGN4-201ENST00000377575 LAGE3Q14657 143 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 CDPF1Q6NVV7 123 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 RPL36ALQ969Q0 106 aaKnown RBP11.33□□□□□ -0.6
HMGN4-201ENST00000377575 Q9UF83 564 aa11.33□□□□□ -0.6
HMGN4-201ENST00000377575 XKRY2A2RUG3 117 aa11.32□□□□□ -0.6
HMGN4-201ENST00000377575 RAB19A4D1S5 217 aa11.32□□□□□ -0.6
HMGN4-201ENST00000377575 AP1S3Q96PC3 154 aa11.32□□□□□ -0.6
HMGN4-201ENST00000377575 PGPEP1Q9NXJ5 209 aa11.32□□□□□ -0.6
HMGN4-201ENST00000377575 TRBV7-3A0A075B6L6 115 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 P01737 135 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 SMIM17P0DL12 118 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 BLOC1S1P78537 153 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 ALKAL2Q6UX46 152 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 OR2D3Q8NGH3 330 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 Q9HAA7 133 aa11.31□□□□□ -0.6
HMGN4-201ENST00000377575 MUC21A0A0G2JKD1 596 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 MUC21A0A140T8X8 626 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 C19orf71A6NCJ1 209 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 FER1L6-AS1Q8NA97 138 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 OR10G8Q8NGN5 311 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 TPPP3Q9BW30 176 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 URGCP-MRPS24S4R325 110 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 DNAH5Q8TE73 4624 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 RYR1P21817 5038 aa11.3□□□□□ -0.6
HMGN4-201ENST00000377575 TRBV20OR9-2A0A075B6H5 130 aa11.29□□□□□ -0.6
HMGN4-201ENST00000377575 J3QL48 77 aa11.29□□□□□ -0.6
HMGN4-201ENST00000377575 SMCPP49901 116 aaPredicted RBP11.29□□□□□ -0.6
HMGN4-201ENST00000377575 UBE2D3P61077 147 aa11.29□□□□□ -0.6
HMGN4-201ENST00000377575 UBE2D2P62837 147 aa11.29□□□□□ -0.6
HMGN4-201ENST00000377575 TOR2AQ5JU69 321 aa11.29□□□□□ -0.6
HMGN4-201ENST00000377575 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.29□□□□□ -0.6
HMGN4-201ENST00000377575 F5H697 171 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 IGLC6P0CF74 106 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 GZMBP10144 247 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 SSTP61278 116 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 CACNG7P62955 275 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 KCNIP4Q6PIL6 250 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 TM2D2Q9BX73 214 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 HSPG2P98160 4391 aa11.28□□□□□ -0.6
HMGN4-201ENST00000377575 TRAV8-3A0A0A6YYJ7 113 aa11.27□□□□□ -0.61
HMGN4-201ENST00000377575 Q8N3U1 123 aa11.27□□□□□ -0.61
HMGN4-201ENST00000377575 NEXN-AS1Q8NBZ9 246 aa11.27□□□□□ -0.61
HMGN4-201ENST00000377575 RBFOX3A6NFN3 312 aa11.26□□□□□ -0.61
HMGN4-201ENST00000377575 F2Z2F3 143 aa11.26□□□□□ -0.61
HMGN4-201ENST00000377575 NIT1Q86X76 327 aa11.26□□□□□ -0.61
HMGN4-201ENST00000377575 CHCHD7Q9BUK0 85 aa11.26□□□□□ -0.61
HMGN4-201ENST00000377575 TMEM250H0YL14 139 aa11.25□□□□□ -0.61
HMGN4-201ENST00000377575 DAZ4Q86SG3 579 aaKnown RBP11.25□□□□□ -0.61
HMGN4-201ENST00000377575 LYPD6BQ8NI32 183 aa11.25□□□□□ -0.61
HMGN4-201ENST00000377575 DAZ3Q9NR90 486 aaKnown RBP11.25□□□□□ -0.61
HMGN4-201ENST00000377575 A0A087WX48 190 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms