RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 K7EQG2 157 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 GNG7O60262 68 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 OR5AL1P0C617 328 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 COX6B1P14854 86 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 FABP4P15090 132 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 CEACAM3P40198 252 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 LCN12Q6JVE5 192 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 OR10D4PQ8NGN7 298 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 PRSS3P2Q8NHM4 247 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 PHLDA1Q8WV24 401 aaPredicted RBP1.66□□□□□ -2.14
VPS54-202ENST00000354504 RASL10AQ92737 203 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 C2orf88Q9BSF0 95 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 Q9H8V8 135 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 HIF1ANQ9NWT6 349 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 SIGLEC8Q9NYZ4 499 aa1.66□□□□□ -2.14
VPS54-202ENST00000354504 TRAV30A0A087WSZ9 112 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 TMSB15BA0A087X1C1 80 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 B4DSR2 109 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 H3BUX3 64 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 J3QLI3 93 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 S100A9P06702 114 aaKnown RBP1.65□□□□□ -2.14
VPS54-202ENST00000354504 GATA1P15976 413 aaPredicted RBP1.65□□□□□ -2.14
VPS54-202ENST00000354504 S100A2P29034 98 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 KIAA1644Q3SXP7 199 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 MRPL51Q4U2R6 128 aaKnown RBP1.65□□□□□ -2.14
VPS54-202ENST00000354504 FAM104BQ5XKR9 115 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 UNQ5815/PRO19632Q6UWF5 114 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 GOLT1AQ6ZVE7 132 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 Q8N9P0 234 aaPredicted RBP1.65□□□□□ -2.14
VPS54-202ENST00000354504 OR4B1Q8NGF8 309 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 PTH2Q96A98 100 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 ODF3Q96PU9 254 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 RASL11BQ9BPW5 248 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 NAT8BQ9UHF3 227 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 FAT1Q14517 4588 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 TENM2Q9NT68 2774 aa1.65□□□□□ -2.14
VPS54-202ENST00000354504 IGLV4-69A0A075B6H9 119 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 IGHV4OR15-8A0A075B7B6 117 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 A0A087WW49 117 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 IGLC3P0DOY3 106 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 SLC25A16P16260 332 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 S100PP25815 95 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 GPR183P32249 361 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 TFPI2P48307 235 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 ZNF138P52744 262 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 PMCHL1Q16048 86 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 LYZL1Q6UWQ5 148 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 MAPKAPK5-AS1Q8N8E1 139 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 STXBP6Q8NFX7 210 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 OR2D3Q8NGH3 330 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 CMTM2Q8TAZ6 248 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 NRN1Q9NPD7 142 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 TRAPPC1Q9Y5R8 145 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 MYCBP2O75592 4640 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 SNURFLB1AK76 121 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 F6UB75 175 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 NPYP01303 97 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 ZNF705DP0CH99 300 aaPredicted RBP1.65□□□□□ -2.15
VPS54-202ENST00000354504 ZNF705BP0CI00 300 aaPredicted RBP1.65□□□□□ -2.15
VPS54-202ENST00000354504 P0DMU3 169 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 FAM231AP0DMU4 169 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 FAM231CP0DMU5 169 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 IGHV4-30-4P0DP06 118 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 HTN1P15515 57 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 IGLL1P15814 213 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 SRIP30626 198 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 BRS3P32247 399 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 POLR2KP53803 58 aaKnown RBP1.65□□□□□ -2.15
VPS54-202ENST00000354504 UBE2G1P62253 170 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 RPL24P83731 157 aaKnown RBP1.65□□□□□ -2.15
VPS54-202ENST00000354504 LCE1EQ5T753 118 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 MRPL54Q6P161 138 aaKnown RBP1.65□□□□□ -2.15
VPS54-202ENST00000354504 CLEC19AQ6UXS0 136 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 FAM19A3Q7Z5A8 133 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 BAGE2Q86Y30 109 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 FAM19A2Q8N3H0 131 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 ZNF479Q96JC4 524 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 TMEM191AQ9H0A3 160 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 CLEC5AQ9NY25 188 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 VPREB3Q9UKI3 123 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 LENEPQ9Y5L5 61 aa1.65□□□□□ -2.15
VPS54-202ENST00000354504 IGKV2D-26A0A0A0MRZ7 120 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 IGHV3-16A0A0C4DH30 117 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 A0A0J9YX75 114 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 SERTM2A0A1B0GWG4 89 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 ZNF705GA8MUZ8 300 aaPredicted RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 H0Y8G0 127 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 MT-ND6P03923 174 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 TAS2R45P59539 299 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 RPL32P62910 135 aaKnown RBP1.64□□□□□ -2.15
VPS54-202ENST00000354504 HBBP68871 147 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 GAGE5Q13069 117 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 GAGE6Q13070 117 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 BPIFA4PQ86YQ2 179 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 SBSPONQ8IVN8 264 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 LINC00612Q8N6U2 182 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 OR10AG1Q8NH19 301 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 NDUFAF3Q9BU61 184 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 SMPXQ9UHP9 88 aa1.64□□□□□ -2.15
VPS54-202ENST00000354504 IGIPA6NJ69 53 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms