RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 IGHV3-30-5P0DP03 117 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 TPT1P13693 172 aaKnown RBP11.86□□□□□ -0.51
HDDC3-201ENST00000330334 GCSHP23434 173 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 EIF5AP63241 154 aaKnown RBP11.86□□□□□ -0.51
HDDC3-201ENST00000330334 C14orf178Q8N769 122 aaPredicted RBP11.86□□□□□ -0.51
HDDC3-201ENST00000330334 FAM213BQ8TBF2 198 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 TM2D2Q9BX73 214 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 Q9UF83 564 aa11.86□□□□□ -0.51
HDDC3-201ENST00000330334 KANTRA0A1W2PQU2 76 aa11.85□□□□□ -0.51
HDDC3-201ENST00000330334 ZFP82Q8N141 532 aa11.85□□□□□ -0.51
HDDC3-201ENST00000330334 MLST8Q9BVC4 326 aa11.85□□□□□ -0.51
HDDC3-201ENST00000330334 ZNF471Q9BX82 626 aaPredicted RBP11.85□□□□□ -0.51
HDDC3-201ENST00000330334 FAT1Q14517 4588 aa11.84□□□□□ -0.51
HDDC3-201ENST00000330334 TRBV10-1A0A0K0K1A3 114 aa11.84□□□□□ -0.51
HDDC3-201ENST00000330334 CXCL1P09341 107 aa11.84□□□□□ -0.51
HDDC3-201ENST00000330334 Q9HAA7 133 aa11.84□□□□□ -0.51
HDDC3-201ENST00000330334 TRAV8-3A0A0A6YYJ7 113 aa11.83□□□□□ -0.52
HDDC3-201ENST00000330334 EPM2AB3EWF7 344 aa11.83□□□□□ -0.52
HDDC3-201ENST00000330334 H2AFB1P0C5Y9 115 aa11.83□□□□□ -0.52
HDDC3-201ENST00000330334 TOR2AQ5JU69 321 aa11.83□□□□□ -0.52
HDDC3-201ENST00000330334 Q8N814 137 aa11.83□□□□□ -0.52
HDDC3-201ENST00000330334 A0A087WWL8 130 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 TMSB15BA0A087X1C1 80 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 IGLV5-52A0A0A0MRZ9 124 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 M0R381 172 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 PFDN1O60925 122 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 FAM74A4Q5TZK3 123 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 BAGE2Q86Y30 109 aa11.82□□□□□ -0.52
HDDC3-201ENST00000330334 SCO2A0A1W2PP80 73 aa11.81□□□□□ -0.52
HDDC3-201ENST00000330334 TMUB2Q71RG4 321 aa11.81□□□□□ -0.52
HDDC3-201ENST00000330334 SSBP4Q9BWG4 385 aaPredicted RBP11.81□□□□□ -0.52
HDDC3-201ENST00000330334 COX11Q9Y6N1 276 aa11.81□□□□□ -0.52
HDDC3-201ENST00000330334 TRAV1-1A0A0B4J248 108 aa11.8□□□□□ -0.52
HDDC3-201ENST00000330334 Q8N3U1 123 aa11.8□□□□□ -0.52
HDDC3-201ENST00000330334 TMEM70Q9BUB7 260 aa11.8□□□□□ -0.52
HDDC3-201ENST00000330334 TRBV7-3A0A075B6L6 115 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 OR5AL1P0C617 328 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 RAB5CP51148 216 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 RAB4BP61018 213 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 RPL36AP83881 106 aaKnown RBP11.79□□□□□ -0.52
HDDC3-201ENST00000330334 DAZ4Q86SG3 579 aaKnown RBP11.79□□□□□ -0.52
HDDC3-201ENST00000330334 NIT1Q86X76 327 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 OR10G8Q8NGN5 311 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 RPL36ALQ969Q0 106 aaKnown RBP11.79□□□□□ -0.52
HDDC3-201ENST00000330334 CHCHD7Q9BUK0 85 aa11.79□□□□□ -0.52
HDDC3-201ENST00000330334 DAZ3Q9NR90 486 aaKnown RBP11.79□□□□□ -0.52
HDDC3-201ENST00000330334 A0A1B0GV50 99 aa11.78□□□□□ -0.52
HDDC3-201ENST00000330334 SNAI2O43623 268 aa11.78□□□□□ -0.52
HDDC3-201ENST00000330334 C1QBP02746 253 aa11.78□□□□□ -0.52
HDDC3-201ENST00000330334 MANBALQ9NQG1 85 aa11.78□□□□□ -0.52
HDDC3-201ENST00000330334 URGCP-MRPS24S4R325 110 aa11.78□□□□□ -0.52
HDDC3-201ENST00000330334 UBE2D3P61077 147 aa11.77□□□□□ -0.53
HDDC3-201ENST00000330334 UBE2D2P62837 147 aa11.77□□□□□ -0.53
HDDC3-201ENST00000330334 EIF5AL1Q6IS14 154 aaKnown RBP11.77□□□□□ -0.53
HDDC3-201ENST00000330334 C11orf52Q96A22 123 aa11.77□□□□□ -0.53
HDDC3-201ENST00000330334 RPL35P42766 123 aaKnown RBP11.76□□□□□ -0.53
HDDC3-201ENST00000330334 RPL19P84098 196 aaKnown RBP11.76□□□□□ -0.53
HDDC3-201ENST00000330334 ELOBQ15370 118 aa11.76□□□□□ -0.53
HDDC3-201ENST00000330334 PRR27Q6MZM9 219 aa11.76□□□□□ -0.53
HDDC3-201ENST00000330334 OR10AG1Q8NH19 301 aa11.76□□□□□ -0.53
HDDC3-201ENST00000330334 FRZBQ92765 325 aa11.76□□□□□ -0.53
HDDC3-201ENST00000330334 RMI2Q96E14 147 aa11.76□□□□□ -0.53
HDDC3-201ENST00000330334 CCL20P78556 96 aa11.75□□□□□ -0.53
HDDC3-201ENST00000330334 TEX46H3BTG2 121 aa11.74□□□□□ -0.53
HDDC3-201ENST00000330334 Q5VSD8 79 aa11.74□□□□□ -0.53
HDDC3-201ENST00000330334 GNG13Q9P2W3 67 aa11.74□□□□□ -0.53
HDDC3-201ENST00000330334 SRRM2Q9UQ35 2752 aaKnown RBP11.74□□□□□ -0.53
HDDC3-201ENST00000330334 A0A087WX48 190 aa11.73□□□□□ -0.53
HDDC3-201ENST00000330334 TRBV6-8A0A0A6YYG3 113 aa11.73□□□□□ -0.53
HDDC3-201ENST00000330334 WFDC2Q14508 124 aa11.73□□□□□ -0.53
HDDC3-201ENST00000330334 SPANXN1Q5VSR9 72 aa11.73□□□□□ -0.53
HDDC3-201ENST00000330334 SMIM12Q96EX1 92 aa11.73□□□□□ -0.53
HDDC3-201ENST00000330334 DNAH8Q96JB1 4490 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 SULT1A2P50226 295 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 ZNF56Q15929 161 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 KCNIP4Q6PIL6 250 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 ATRAIDQ6UW56 229 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 TCTE3Q8IZS6 198 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 NEXN-AS1Q8NBZ9 246 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 KLK12Q9UKR0 248 aa11.72□□□□□ -0.53
HDDC3-201ENST00000330334 INAFM2P0DMQ5 153 aa11.71□□□□□ -0.53
HDDC3-201ENST00000330334 Q0VG73 95 aa11.71□□□□□ -0.53
HDDC3-201ENST00000330334 Q8N976 141 aa11.71□□□□□ -0.53
HDDC3-201ENST00000330334 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.71□□□□□ -0.53
HDDC3-201ENST00000330334 DERL1Q9BUN8 251 aa11.71□□□□□ -0.53
HDDC3-201ENST00000330334 KIF25-AS1Q9Y6Z4 181 aa11.71□□□□□ -0.53
HDDC3-201ENST00000330334 VPS13BQ7Z7G8 4022 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 FAM229AH3BQW9 127 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 PDE6DO43924 150 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 IGLV2-8P01709 118 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 RPS20P60866 119 aaKnown RBP11.7□□□□□ -0.54
HDDC3-201ENST00000330334 TMEM97Q5BJF2 176 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 VAX2Q9UIW0 290 aa11.7□□□□□ -0.54
HDDC3-201ENST00000330334 SMR3BP02814 79 aaPredicted RBP11.69□□□□□ -0.54
HDDC3-201ENST00000330334 SMIM17P0DL12 118 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 PKIAP61925 76 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 MEF2BQ02080 365 aaPredicted RBP11.69□□□□□ -0.54
HDDC3-201ENST00000330334 CENPWQ5EE01 88 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 Q6ZSA8 131 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 BAALCQ8WXS3 180 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms